MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-541

Family name MIR-541 (all species)
Seed AGGGAUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-541
Paralogues
Orthologues Bta-Mir-541  Cpo-Mir-541  Dno-Mir-541  Ete-Mir-541  Hsa-Mir-541  Mml-Mir-541  Ocu-Mir-541  Rno-Mir-541 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chr12: 109742422-109742487 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-541)
Mir-154-P7 chr12: 109709065-109709122 [+] UCSC Ensembl
Mir-154-P13 chr12: 109710190-109710245 [+] UCSC Ensembl
Mir-154-P2-v1 chr12: 109710643-109710697 [+] UCSC Ensembl
Mir-154-P2-v2 chr12: 109710644-109710696 [+] UCSC Ensembl
Mir-154-P8 chr12: 109711806-109711862 [+] UCSC Ensembl
Mir-154-P30 chr12: 109712361-109712416 [+] UCSC Ensembl
Mir-154-P3a-v1 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P3a-v2 chr12: 109712523-109712578 [+] UCSC Ensembl
Mir-154-P26 chr12: 109712823-109712880 [+] UCSC Ensembl
Mir-154-P4-o1 chr12: 109713503-109713562 [+] UCSC Ensembl
Mir-154-P18 chr12: 109715334-109715389 [+] UCSC Ensembl
Mir-154-P29-v1 chr12: 109715715-109715771 [+] UCSC Ensembl
Mir-154-P29-v2 chr12: 109715716-109715770 [+] UCSC Ensembl
Mir-666 chr12: 109717103-109717163 [+] UCSC Ensembl
Mir-154-P22 chr12: 109717268-109717326 [+] UCSC Ensembl
Mir-154-P19 chr12: 109718757-109718816 [+] UCSC Ensembl
Mir-667 chr12: 109720020-109720083 [+] UCSC Ensembl
Mir-376-P4 chr12: 109722733-109722790 [+] UCSC Ensembl
Mir-376-P2 chr12: 109723471-109723528 [+] UCSC Ensembl
Mir-376-P1 chr12: 109723787-109723844 [+] UCSC Ensembl
Mir-154-P34 chr12: 109724322-109724384 [+] UCSC Ensembl
Mir-154-P9 chr12: 109726829-109726891 [+] UCSC Ensembl
Mir-154-P17 chr12: 109727346-109727403 [+] UCSC Ensembl
Mir-154-P21 chr12: 109728136-109728197 [+] UCSC Ensembl
Mir-544 chr12: 109729335-109729391 [+] UCSC Ensembl
Mir-154-P10 chr12: 109733781-109733838 [+] UCSC Ensembl
Mir-134 chr12: 109734145-109734205 [+] UCSC Ensembl
Mir-154-P15 chr12: 109734910-109734968 [+] UCSC Ensembl
Mir-154-P1 chr12: 109738438-109738495 [+] UCSC Ensembl
Mir-154-P20-v2 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P20-v1 chr12: 109739132-109739187 [+] UCSC Ensembl
Mir-154-P6 chr12: 109740515-109740574 [+] UCSC Ensembl
Mir-541 chr12: 109742422-109742487 [+] UCSC Ensembl
Mir-154-P36 chr12: 109743172-109743225 [+] UCSC Ensembl
Mir-154-P14 chr12: 109743303-109743358 [+] UCSC Ensembl
Mir-154-P5 chr12: 109743431-109743486 [+] UCSC Ensembl
Mir-154-P12 chr12: 109743729-109743784 [+] UCSC Ensembl
Mir-3072 chr12: 109747893-109747949 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCUGUGUGAACUCUUGCCAAAAUCAGAGAAGGGAUUCUGAUGUUGGUCACACUCCAAGAGUUUUAAAAUGAGUGGCGAACACAGAAUCCAUACUCUGCUUAUGGCCUAAGUCAAUGGAUCCUGA
Get precursor sequence
Structure
        10          20        30        40        50        60   
AGCCUGUGUGAACUCUU--|   A  U     AAG        A    G     ACUCCAAGAG 
                   GCCA AA CAGAG   GGAUUCUG UGUU GUCAC          \
                   CGGU UU GUCUC   CCUAAGAC ACAA CGGUG          U
AGUCCUAGGUAACUGAAUC^   A  C     AUA        -    G     AGUAAAAUUU 
    120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-541_5p

mirBase accessionMIMAT0003170
Sequence
0- AAGGGAUUCUGAUGUUGGUCACA -23
Get sequence
Proposed targets microrna.org: MIMAT0003170
TargetScanVert: mmu-miR-541-5p
miRDB: MIMAT0003170
Star sequence

Mmu-Mir-541_3p*

mirBase accessionMIMAT0017209
Sequence
44- UGGCGAACACAGAAUCCAUACU -66
Get sequence
Proposed targets TargetScanVert: mmu-miR-541-3p
miRDB: MIMAT0017209