MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-489

Family name MIR-489 (all species)
Seed AUGACAC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Aca-Mir-489-v2  Ami-Mir-489-v1  Ami-Mir-489-v2  Bta-Mir-489-v1  Bta-Mir-489-v2  Bta-Mir-489-v3  Cfa-Mir-489  Cli-Mir-489-v1  Cli-Mir-489-v2  Cpi-Mir-489-v1  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v1  Dre-Mir-489-v2  Gga-Mir-489-v1  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v1  Gmo-Mir-489-v2  Hsa-Mir-489-v1  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v1  Loc-Mir-489-v2  Mal-Mir-489-v1  Mal-Mir-489-v2  Mml-Mir-489-v1  Mml-Mir-489-v2  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tgu-Mir-489-v2  Tni-Mir-489-v1  Tni-Mir-489-v2  Xla-Mir-489-P1-v1  Xla-Mir-489-P1-v2  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2  Xtr-Mir-489-v1  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(mm10)
chr6: 3721922-3721981 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)
Mir-653 chr6: 3721314-3721372 [-] UCSC Ensembl
Mir-489 chr6: 3721922-3721981 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUGCUAACUGCUGCAGUGGCAGCUUGGUUGUCAUAUGUGUGAUGACACUUUCUAAAGUCUUCCAGAAUGACACCACAUAUAUGGCAGCUAAACUGUUACAUGGAACAACAAGUAAGAU
Get precursor sequence
Structure
        10          20        30        40        50         
UGCUGCUAACUGCUGCA--|      C                  A  A  C   CUAAA 
                   GUGGCAG UUGGUUGUCAUAUGUGUG UG CA UUU     G
                   CAUUGUC AAUCGACGGUAUAUACAC AC GU AGA     U
UAGAAUGAACAACAAGGUA^      A                  C  A  A   CCUUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut in mouse is +1 relative to the other mammals.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-489_5p* (predicted)

mirBase accessionMIMAT0022704
Sequence
0- UGUCAUAUGUGUGAUGACACUUU -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-489-5p
miRDB: MIMAT0022704
Mature sequence

Mmu-Mir-489_3p

mirBase accessionMIMAT0003112
Sequence
37- AAUGACACCACAUAUAUGGCAGC -60
Get sequence
Proposed targets microrna.org: MIMAT0003112
TargetScanVert: mmu-miR-489-3p
miRDB: MIMAT0003112