MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-203-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-203
Paralogues Mmu-Mir-203-v2 
Orthologues Aca-Mir-203-v1  Ami-Mir-203-v1  Bta-Mir-203-v1  Cfa-Mir-203-v1  Cpi-Mir-203-v1  Cpo-Mir-203-v1  Dno-Mir-203-v1  Ete-Mir-203-v1  Gga-Mir-203-v1  Gja-Mir-203-v1  Hsa-Mir-203-v1  Lch-Mir-203  Loc-Mir-203-v1  Mdo-Mir-203-v1  Mml-Mir-203-v1  Mun-Mir-203-v1  Oan-Mir-203-v1  Ocu-Mir-203-v1  Pbv-Mir-203-v1  Rno-Mir-203-v1  Sha-Mir-203-v1  Spt-Mir-203  Sto-Mir-203-v1  Tgu-Mir-203-v1  Xtr-Mir-203-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr12: 112130889-112130948 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-v1)
Mir-3073-as chr12: 112109250-112109309 [-] UCSC Ensembl
Mir-3073 chr12: 112109252-112109311 [+] UCSC Ensembl
Mir-203-v1 chr12: 112130889-112130948 [+] UCSC Ensembl
Mir-203-v2 chr12: 112130889-112130948 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAACUUCUGUGUGCAGGCGCGCCUGGUCCAGUGGUUCUUGACAGUUCAACAGUUCUGUAGCACAAUUGUGAAAUGUUUAGGACCACUAGACCCGGCGCGCACGGCGGCGACGACAGCAG
Get precursor sequence
Structure
        10          20        30        40        50          
AGAACUUCUGUGUGCAG--|      U    C         U    G    A   UUCUGU 
                   GCGCGCC GGUC AGUGGUUCU GACA UUCA CAG      \
                   CGCGCGG CCAG UCACCAGGA UUGU AAGU GUU      A
GACGACAGCAGCGGCGGCA^      C    A         U    A    -   AACACG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-203-v1_5p*

mirBase accessionMIMAT0004547
Sequence
0- AGUGGUUCUUGACAGUUCAACAG -23
Get sequence
Proposed targets microrna.org: MIMAT0004547
TargetScanVert: mmu-miR-203-5p
miRDB: MIMAT0004547
Mature sequence

Mmu-Mir-203-v1_3p

mirBase accessionMIMAT0000236
Sequence
38- GUGAAAUGUUUAGGACCACUAG -60
Get sequence
Proposed targets microrna.org: MIMAT0000236
TargetScanVert: mmu-miR-203-3p.1
miRDB: MIMAT0000236