MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-1962

Family name MIR-1962 (all species)
Seed GAGGCUG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-1962
Paralogues
Orthologues Rno-Mir-1962-P1  Rno-Mir-1962-P2 
Node of Origin (locus) Muridae
Node of Origin (family) Muridae
Genome context
(mm10)
chr7: 135566193-135566255 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCAUUUGCAAACUAUGUAGUCAGUCAGUGGUCCCAUCUGUCUGCCUCUCUCUCGUUCAGUUUCCAUGGAGAGGCUGGCACUGGGACACAUGACUGAUGGUAUGCUCCCCGCUGCAGUCCC
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Structure
        10        20          30        40        50        60 
GUGGCAUUUGCAAACUAUGUA--|       GUG      UC    U        CUCGUUC 
                       GUCAGUCA   GUCCCA  UGUC GCCUCUCU       A
                       UAGUCAGU   CAGGGU  ACGG CGGAGAGG       G
CCCUGACGUCGCCCCUCGUAUGG^       ACA      C-    U        UACCUUU 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-1962_5p*

mirBase accessionNone
Sequence
0- UGGUCCCAUCUGUCUGCCUCUCU -23
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Mature sequence

Mmu-Mir-1962_3p

mirBase accessionMIMAT0009435
Sequence
41- AGAGGCUGGCACUGGGACACAU -63
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Proposed targets microrna.org: MIMAT0009435
TargetScanVert: mmu-miR-1962
miRDB: MIMAT0009435