MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-1953

Family name MIR-1953 (all species)
Seed GGGAAAG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-1953
Paralogues
Orthologues
Node of Origin (locus) M. musculus
Node of Origin (family) M. musculus
Genome context
(mm10)
chr2: 151967543-151967602 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAUUUCUCCCCCAGGUGCUGCCUGGUCUUGGGAAAGUUCUCAGGCUUCUGAGAAUUUGCAGGAGCAGAAGGCUGUGAGGUUCCCCUCUUCCUGGCAGCCCUAAGAUCUGGGGAGCCAG
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Structure
        10          20        30        40        50         
UUGAUUUCUCCCCCAGGU--|     U  UCUU   A  G   U   G      AGAAUU 
                    GCUGCC GG    GGG AA UUC CAG CUUCUG      U
                    CGACGG CC    CCC UU GAG GUC GAAGAC      G
GACCGAGGGGUCUAGAAUCC^     U  UUCU   C  G   U   G      GAGGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-1953_5p

mirBase accessionMIMAT0009424
Sequence
0- UGGGAAAGUUCUCAGGCUUCUG -22
Get sequence
Proposed targets microrna.org: MIMAT0009424
TargetScanVert: mmu-miR-1953
miRDB: MIMAT0009424
Star sequence

Mmu-Mir-1953_3p*

mirBase accessionNone
Sequence
38- GAAGGCUGUGAGGUUCCCCUCU -60
Get sequence