MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-10-P3c

Family name MIR-10 (all species)
Seed CCCUGAG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-125b-2
Paralogues Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mmu-Mir-10-P2b  Mmu-Mir-10-P2c  Mmu-Mir-10-P2d  Mmu-Mir-10-P3b  Mmu-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Ami-Mir-10-P3c  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Gmo-Mir-10-P3c2  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Loc-Mir-10-P3c  Mal-Mir-10-P3c2  Mdo-Mir-10-P3c  Mml-Mir-10-P3c  Mun-Mir-10-P3c  Nve-Mir-10  Oan-Mir-10-P3c  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ovu-Mir-10-P3  Pbv-Mir-10-P3c  Pmi-Mir-10-P3  Rno-Mir-10-P3c  Sha-Mir-10-P3c  Sko-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Xbo-Mir-10-P3  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xtr-Mir-10-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(mm10)
chr16: 77646279-77646339 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3c)
Mir-10-P2c chr16: 77598940-77598998 [+] UCSC Ensembl
Let-7-P1c chr16: 77599672-77599738 [+] UCSC Ensembl
Mir-10-P3c chr16: 77646279-77646339 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUCCUGCAUCACACGAGACUUUGCCUAGUCCCUGAGACCCUAACUUGUGAGGUAUUUUAGUAACAUCACAAGUCAGGUUCUUGGGACCUAGGCGGAGGGAUACCAGCAGCUUGGGACCU
Get precursor sequence
Structure
        10        20          30        40        50          
UUCUCCUGCAUCACACGAGA--|         UC  UG   C   A        GGUAUUU 
                      CUUUGCCUAG  CC  AGA CCU ACUUGUGA       \
                      GAGGCGGAUC  GG  UCU GGA UGAACACU       U
UCCAGGGUUCGACGACCAUAGG^         CA  GU   U   C        ACAAUGA 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-10-P3c_5p

mirBase accessionMIMAT0000136
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Proposed targets microrna.org: MIMAT0000136
TargetScanVert: mmu-miR-125b-5p
miRDB: MIMAT0000136
Star sequence

Mmu-Mir-10-P3c_3p*

mirBase accessionMIMAT0004529
Sequence
39- ACAAGUCAGGUUCUUGGGACCU -61
Get sequence
Proposed targets microrna.org: MIMAT0004529
TargetScanVert: mmu-miR-125b-2-3p
miRDB: MIMAT0004529