Mir-1-P2

MirGeneDB ID

Mmu-Mir-1-P2

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-206

Paralogues

Mmu-Mir-1-P1 Mmu-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P2 Ami-Mir-1-P2 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P2 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P2 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P2 Cpi-Mir-1-P2 Cpo-Mir-1-P2 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P2 Dpu-Mir-1 Dre-Mir-1-P2a Dre-Mir-1-P2b Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P2 Gga-Mir-1-P2 Gja-Mir-1-P2e Gja-Mir-1-P2f Gmo-Mir-1-P2a Hme-Mir-1 Hsa-Mir-1-P2 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P2 Lgi-Mir-1 Loc-Mir-1-P2 Mal-Mir-1-P2a Mdo-Mir-1-P2 Mml-Mir-1-P2 Mun-Mir-1-P2 Oan-Mir-1-P2 Obi-Mir-1 Ocu-Mir-1-P2 Ovu-Mir-1 Pbv-Mir-1-P2 Pfl-Mir-1 Pma-Mir-1-o2 Pmi-Mir-1 Rno-Mir-1-P2 Sha-Mir-1-P2 Sko-Mir-1 Spt-Mir-1-P2 Spu-Mir-1 Tca-Mir-1 Tgu-Mir-1-P2 Tni-Mir-1-P2a Xbo-Mir-1 Xla-Mir-1-P2c Xla-Mir-1-P2d Xtr-Mir-1-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr1: 20679017-20679076 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P2)

Mir-1-P2 chr1: 20679017-20679076 [+] UCSC Ensembl
Mir-133-P2-v1 chr1: 20682797-20682855 [+] UCSC Ensembl
Mir-133-P2-v2 chr1: 20682797-20682855 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCCUCGGAGGACACAGCUUCCCCAGGCCACAUGCUUCUUUAUAUCCUCAUAGAUAUCUCAGCACUAUGGAAUGUAAGGAAGUGUGUGGUUUUGGCAAGUGCUUCUUCAAGGCCGAUGG

Get precursor sequence

Structure

        10          20        30        40        50          
GUGCCUCGGAGGACACA--|   C  C                     C U    GAUAUC 
                   GCUU CC AGGCCACAUGCUUCUUUAUAU C CAUA      \
                   UGAA GG UUUGGUGUGUGAAGGAAUGUA G GUAU      U
GGUAGCCGGAACUUCUUCG^   C  U                     A -    CACGAC 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-1-P2_5p*

mirBase accession

MIMAT0017004

Sequence

0- ACAUGCUUCUUUAUAUCCUCAUA -23

Get sequence

Proposed targets

TargetScanVert: mmu-miR-206-5p
miRDB: MIMAT0017004

Mature sequence

Mmu-Mir-1-P2_3p

mirBase accession

MIMAT0000239

Sequence

38- UGGAAUGUAAGGAAGUGUGUGG -60

Get sequence

Proposed targets

microrna.org: MIMAT0000239
TargetScanVert: mmu-miR-206-3p
miRDB: MIMAT0000239