Mir-541

MirGeneDB ID

Mml-Mir-541

Family name

MIR-541 (all species)

Seed

AAGGAUU

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-541

Paralogues

Orthologues

Bta-Mir-541 Cpo-Mir-541 Dno-Mir-541 Ete-Mir-541 Hsa-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Rno-Mir-541

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rheMac8_trace)

chr7: 163398297-163398362 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-541)

Mir-154-P7 chr7: 163357375-163357433 [+] UCSC Ensembl
Mir-154-P13 chr7: 163358644-163358699 [+] UCSC Ensembl
Mir-154-P2-v1 chr7: 163359100-163359154 [+] UCSC Ensembl
Mir-154-P2-v2 chr7: 163359101-163359153 [+] UCSC Ensembl
Mir-154-P8 chr7: 163360321-163360377 [+] UCSC Ensembl
Mir-154-P3a-v1 chr7: 163361049-163361104 [+] UCSC Ensembl
Mir-154-P3a-v2 chr7: 163361049-163361104 [+] UCSC Ensembl
Mir-154-P26 chr7: 163361342-163361399 [+] UCSC Ensembl
Mir-154-P4a chr7: 163362105-163362162 [+] UCSC Ensembl
Mir-154-P4b chr7: 163362422-163362480 [+] UCSC Ensembl
Mir-154-P18 chr7: 163364085-163364140 [+] UCSC Ensembl
Mir-154-P22 chr7: 163366429-163366486 [+] UCSC Ensembl
Mir-154-P19 chr7: 163368279-163368336 [+] UCSC Ensembl
Mir-376-P4 chr7: 163373702-163373759 [+] UCSC Ensembl
Mir-376-P3 chr7: 163374087-163374144 [+] UCSC Ensembl
Mir-154-P23 chr7: 163374240-163374295 [+] UCSC Ensembl
Mir-376-P2 chr7: 163374466-163374523 [+] UCSC Ensembl
Mir-376-P1 chr7: 163374794-163374851 [+] UCSC Ensembl
Mir-154-P28b chr7: 163376994-163377053 [+] UCSC Ensembl
Mir-154-P28a chr7: 163378214-163378273 [+] UCSC Ensembl
Mir-154-P9 chr7: 163379932-163379994 [+] UCSC Ensembl
Mir-154-P17 chr7: 163380474-163380531 [+] UCSC Ensembl
Mir-154-P21 chr7: 163381324-163381387 [+] UCSC Ensembl
Mir-154-P27 chr7: 163381903-163381961 [+] UCSC Ensembl
Mir-544 chr7: 163382670-163382726 [+] UCSC Ensembl
Mir-154-P10 chr7: 163388330-163388387 [+] UCSC Ensembl
Mir-134 chr7: 163388708-163388768 [+] UCSC Ensembl
Mir-154-P15 chr7: 163389442-163389500 [+] UCSC Ensembl
Mir-154-P3b chr7: 163390241-163390297 [+] UCSC Ensembl
Mir-154-P1 chr7: 163393764-163393821 [+] UCSC Ensembl
Mir-154-P20-v2 chr7: 163394623-163394678 [+] UCSC Ensembl
Mir-154-P20-v1 chr7: 163394623-163394678 [+] UCSC Ensembl
Mir-154-P6 chr7: 163395856-163395915 [+] UCSC Ensembl
Mir-541 chr7: 163398297-163398362 [+] UCSC Ensembl
Mir-154-P36 chr7: 163399110-163399163 [+] UCSC Ensembl
Mir-154-P14 chr7: 163399261-163399315 [+] UCSC Ensembl
Mir-154-P5 chr7: 163399401-163399456 [+] UCSC Ensembl
Mir-154-P12 chr7: 163399719-163399775 [+] UCSC Ensembl
Mir-154-P25 chr7: 163400526-163400581 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCUCUCUGAGCUCAUGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUGCAUAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCAUCUGUCGUCCGGCCCGAU

Get precursor sequence

Structure

        10          20        30        40        50        60    
GGGCUCUCUGAGCUCAU--|   ACGU     AAA        C    G UC     CCAAAGUG 
                   GCCA    CAGGG   GGAUUCUG UGUC G  CCACU        \
                   CGGU    GUCUC   CCUAAGAC ACGG U  GGUGG        C
UAGCCCGGCCUGCUGUCUA^   GUUC     AGG        -    G --     GUAAGAUA 
    120       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-541_5p

mirBase accession

MIMAT0012784

Sequence

0- AAAGGAUUCUGCUGUCGGUCCCACU -25

Get sequence

Proposed targets

TargetScanVert: mml-miR-541-5p

Star sequence

Mml-Mir-541_3p*

mirBase accession

MIMAT0026951

Sequence

44- UGGUGGGCACAGAAUCCGGACU -66

Get sequence

Proposed targets

TargetScanVert: mml-miR-541-3p