Mir-506-P5

MirGeneDB ID

Mml-Mir-506-P5

Family name

MIR-506 (all species)

Seed

ACUCCGG

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-510

Paralogues

Mml-Mir-506-P1 Mml-Mir-506-P2 Mml-Mir-506-P3 Mml-Mir-506-P4d Mml-Mir-506-P4e Mml-Mir-506-P4f Mml-Mir-506-P6a Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Mml-Mir-506-P6c1 Mml-Mir-506-P6c2 Mml-Mir-506-P7a Mml-Mir-506-P8 Mml-Mir-506-P9 Mml-Mir-506-P10 Mml-Mir-506-P11 Mml-Mir-506-P12 Mml-Mir-506-P13 Mml-Mir-506-P29

Orthologues

Cpo-Mir-506-o5 Hsa-Mir-506-P5 Ocu-Mir-506-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rheMac8_trace)

chrX: 140974554-140974611 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5)

Mir-506-P6a chrX: 140933343-140933400 [-] UCSC Ensembl
Mir-506-P1 chrX: 140946831-140946887 [-] UCSC Ensembl
Mir-506-P2 chrX: 140947157-140947214 [-] UCSC Ensembl
Mir-506-P3 chrX: 140953023-140953080 [-] UCSC Ensembl
Mir-506-P8 chrX: 140957066-140957123 [-] UCSC Ensembl
Mir-506-P4e chrX: 140966427-140966484 [-] UCSC Ensembl
Mir-506-P5 chrX: 140974554-140974611 [-] UCSC Ensembl
Mir-506-P7a chrX: 140981185-140981242 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCAGGAAUGCUGUGUGUGUGUGGUAUCCUACUCCGGAGAGUGGCAAUCACAUAUAAUUAAGUGUGAUUGAAACCUCUAAGAGUGGAGUAACACAUGACAUGUACUACAUAUGAAAU

Get precursor sequence

Structure

        10          20        30         40        50        
UUUCAGGAAUGCUGUGU-  -     G  UC      C-|   A  GG        UAUA 
                  GU GUGUG UA  CUACUC  GGAG GU  CAAUCACA    A
                  CA UACAC AU  GGUGAG  UCUC CA  GUUAGUGU    U
UAAAGUAUACAUCAUGUA  G     A  GA      AA^   -  AA        GAAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-506-P5_5p

mirBase accession

MIMAT0005766

Sequence

0- UACUCCGGAGAGUGGCAAUCACA -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-510-5p

Star sequence

Mml-Mir-506-P5_3p*

mirBase accession

MIMAT0026747

Sequence

35- UGAUUGAAACCUCUAAGAGUGGA -58

Get sequence

Proposed targets

TargetScanVert: mml-miR-510-3p