MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-30b
Paralogues Mml-Mir-30-P1a  Mml-Mir-30-P1b  Mml-Mir-30-P1d  Mml-Mir-30-P2b  Mml-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rheMac8_trace)
chr8: 134094388-134094447 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a chr8: 134094388-134094447 [-] UCSC Ensembl
Mir-30-P1a chr8: 134099794-134099855 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCCUGCUUUAAACCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUAAUACAUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAUCAACCAAUUAACAU
Get precursor sequence
Structure
        10            20        30        40         50         
AAGUCCUGCUUUAAACC----|  UU      CAU          U  A-       GUAAUA 
                     AAG  UCAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUC  AGUCGA   CAUUUGUAGG UG  GGGUCGG      A
UACAAUUAACCAACUAUAAGG^  --      CUU          -  GA       UUAGGU 
.       110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-30-P2a_5p

mirBase accessionMIMAT0002213
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
Proposed targets TargetScanVert: mml-miR-30b-5p
Star sequence

Mml-Mir-30-P2a_3p*

mirBase accessionMIMAT0026563
Sequence
38- CUGGGAGGUGGAUGUUUACUUC -60
Get sequence
Proposed targets TargetScanVert: mml-miR-30b-3p