MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-17
Paralogues Mml-Mir-17-P1c  Mml-Mir-17-P1d  Mml-Mir-17-P2a  Mml-Mir-17-P2c  Mml-Mir-17-P4a  Mml-Mir-17-P4c  Mml-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rheMac8_trace)
chr17: 73096120-73096179 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)
Mir-17-P1a chr17: 73096120-73096179 [+] UCSC Ensembl
Mir-17-P2a chr17: 73096258-73096322 [+] UCSC Ensembl
Mir-19-P1a chr17: 73096406-73096463 [+] UCSC Ensembl
Mir-17-P4a chr17: 73096574-73096632 [+] UCSC Ensembl
Mir-19-P2a chr17: 73096709-73096769 [+] UCSC Ensembl
Mir-92-P1a chr17: 73096826-73096884 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGUUGCCUCGGGAAGCCAA
Get precursor sequence
Structure
        10          20        30         40        50         
ACUGAAGAUUGUGACCA--    GA       CA-|       A  G     G   UGAUA 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG     U
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC     G
AACCGAAGGGCUCCGUUGA    GG       AUG^       A  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-17-P1a_5p

mirBase accessionMIMAT0002700
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanVert: mml-miR-17-5p
Star sequence

Mml-Mir-17-P1a_3p*

mirBase accessionMIMAT0002701
Sequence
37- ACUGCAGUGAAGGCACUUGUAGC -60
Get sequence
Proposed targets TargetScanVert: mml-miR-17-3p