MirGeneDB 2.1

MirGeneDB ID

Mdo-Novel-3

Family name MAR-NOVEL-3 (all species)
Seed UUUCUCC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID
Paralogues
Orthologues Sha-Novel-3 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
4: 243039015-243039072 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAAGUGGAGCAGUAAUAGCAGUGGGGUCAUUUCUCCCCUUUGAGCUCAGGGGGGUAGAAGAGCACCUGAACUGUGGAGAGAAAAGACUCCUAUGUUGCCUUUCAACAUCCUGCUUG
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Structure
        10          20        30        40        50         
CAGAAGUGGAGCAGUAA--|    GU      A      C  UUUG  C     GGGGUA 
                   UAGCA  GGGGUC UUUCUC CC    AG UCAGG      G
                   GUUGU  CCUCAG AAAGAG GG    UC AGUCC      A
GUUCGUCCUACAACUUUCC^    AU      A      A  UG--  A     ACGAGA 
      110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Novel-3_5p

mirBase accessionNone
Sequence
0- AUUUCUCCCCUUUGAGCUCAGG -22
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Co-mature sequence

Mdo-Novel-3_3p

mirBase accessionNone
Sequence
38- UGAACUGUGGAGAGAAAAGA -58
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