| MirGeneDB ID | Mdo-Novel-1 |
|---|
| Family name |
MAR-NOVEL-1 (all species) |
|---|
| Seed |
UCAACAC |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-505
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Sha-Novel-1
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(monDom5_add) |
6: 32562783-32562842 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAAUGGUGAUCAACUCAUGGAUGUUCUGGAAGGGGAACCAGGUGAUUGCGUGCCUAUUGAAGACAGCAUCAACACUUCUUGUUUCUCUCUCCAGAGCAUCAUUCAACAAACAAAGUUGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUGGUGAUCAACUCAUG- - C--| A C CUAUU
GAUGUUCUGGA AGGGGAAC AGGUG UUG GUGC G
CUACGAGACCU UCUCUUUG UUCAC AAC UACG A
UUGUUGAAACAAACAACUUA C UUC^ - - ACAGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although named mir-505 by miRBase this locus is neither similar in sequence nor syntenic with Mir-505 in eutherian mammals and thus is given a different name. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Mdo-Novel-1_5p* |
| mirBase accession | MIMAT0028662 |
|---|
| Sequence |
0- AGGGGAACCAGGUGAUUGCGUGC -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-505-5p
|
|---|
| Mature sequence |
Mdo-Novel-1_3p |
| mirBase accession | MIMAT0028663 |
|---|
| Sequence |
37- AUCAACACUUCUUGUUUCUCUCU -60
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-505-3p
|
|---|
