MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7394-P3

Family name MIR-7394 (all species)
Seed GUGACCU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7394b
Paralogues Mdo-Mir-7394-P1  Mdo-Mir-7394-P2 
Orthologues Sha-Mir-7394-P3 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 47675602-47675655 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7394-P3)
Mir-7393 X: 47653725-47653778 [+] UCSC Ensembl
Mir-7394-P1 X: 47660934-47660987 [+] UCSC Ensembl
Mir-7395 X: 47661482-47661537 [+] UCSC Ensembl
Mir-7394-P2 X: 47667188-47667241 [+] UCSC Ensembl
Mir-7397 X: 47672118-47672173 [+] UCSC Ensembl
Mir-7394-P3 X: 47675602-47675655 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGUCAUCAGACUUGGGUUGCCCCAGGUACAUGUAUGCCCAGGUUACUUGCUGCUCUACAUGUGACCUUGCCAUACAUGUUCCUGUUGCAUACCUCUCCUGUAGUUCACUGG
Get precursor sequence
Structure
        10         20         30        40        50      
UGGAGUCAUCAGACUUG-   -|  CC    U         CCC       U  CUG 
                  GGU UGC  CAGG ACAUGUAUG   AGGUUAC UG   C
                  CCA ACG  GUCC UGUACAUAC   UCCAGUG AC   U
GGUCACUUGAUGUCCUCU   U^  UU    U         CGU       U  AUC 
  110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7394-P3_5p* (predicted)

mirBase accessionMIMAT0028894
Sequence
0- ACAUGUAUGCCCAGGUUACUUG -22
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Proposed targets TargetScanVert: mdo-miR-7394b-5p
Mature sequence

Mdo-Mir-7394-P3_3p

mirBase accessionMIMAT0028895
Sequence
32- UGUGACCUUGCCAUACAUGUUC -54
Get sequence
Proposed targets TargetScanVert: mdo-miR-7394b-3p