MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7385-P5b

Family name MIR-7385 (all species)
Seed AGUCUGA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7385g-2
Paralogues Mdo-Mir-7385-P1a  Mdo-Mir-7385-P1b  Mdo-Mir-7385-P1c  Mdo-Mir-7385-P2-v1  Mdo-Mir-7385-P2-v2  Mdo-Mir-7385-P3  Mdo-Mir-7385-P4  Mdo-Mir-7385-P5a  Mdo-Mir-7385-P5c  Mdo-Mir-7385-P6  Mdo-Mir-7385-P7  Mdo-Mir-7385-P8 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 4614848-4614909 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7385-P5b)
Mir-7385-P1a X: 4607962-4608023 [+] UCSC Ensembl
Mir-7385-P1b X: 4609054-4609115 [+] UCSC Ensembl
Mir-7385-P2-v1 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P2-v2 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P3 X: 4611475-4611536 [+] UCSC Ensembl
Mir-7385-P4 X: 4611934-4611995 [+] UCSC Ensembl
Mir-7385-P5a X: 4612215-4612273 [+] UCSC Ensembl
Mir-7385-P6 X: 4614575-4614633 [+] UCSC Ensembl
Mir-7385-P5b X: 4614848-4614909 [+] UCSC Ensembl
Mir-7385-P7 X: 4615421-4615479 [+] UCSC Ensembl
Mir-7385-P8 X: 4616510-4616572 [+] UCSC Ensembl
Mir-7385-P1c X: 4616788-4616846 [+] UCSC Ensembl
Mir-7385-P5c X: 4617777-4617835 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGCCCUCAUUUUUCUUAAGGUCUCUUCUUAGUCUGAUAUUCCAUGUUUCUAGGGUAUCAAGAGACUUGGAGCAUAGAAUGUCAGGUCUAGAAGUUACCUUAACGUAUCAGUGGAUGAUAG
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Structure
        10          20        30         40        50        60
AUGGCCCUCAUUUUUCU--|     CU     U  -          C       UAGGGUAU 
                   UAAGGU  CUUCU AG UCUGAUAUUC AUGUUUC        C
                   AUUCCA  GAAGA UC GGACUGUAAG UACGAGG        A
GAUAGUAGGUGACUAUGCA^     UU     -  U          A       UUCAGAGA 
120       110       100         90        80        70
Deep sequencing
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CommentThere is a Dicer cut -1.
3' NTU Yes
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-7385-P5b_5p

mirBase accessionMIMAT0050380
Sequence
0- UAGUCUGAUAUUCCAUGUUUCU -22
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Star sequence

Mdo-Mir-7385-P5b_3p*

mirBase accessionMIMAT0050492
Sequence
40- GAGCAUAGAAUGUCAGGUCUAG -62
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