MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7385-P4

Family name MIR-7385 (all species)
Seed AGCAUAG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7385d
Paralogues Mdo-Mir-7385-P1a  Mdo-Mir-7385-P1b  Mdo-Mir-7385-P1c  Mdo-Mir-7385-P2-v1  Mdo-Mir-7385-P2-v2  Mdo-Mir-7385-P3  Mdo-Mir-7385-P5a  Mdo-Mir-7385-P5b  Mdo-Mir-7385-P5c  Mdo-Mir-7385-P6  Mdo-Mir-7385-P7  Mdo-Mir-7385-P8 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 4611934-4611995 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7385-P4)
Mir-7385-P1a X: 4607962-4608023 [+] UCSC Ensembl
Mir-7385-P1b X: 4609054-4609115 [+] UCSC Ensembl
Mir-7385-P2-v1 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P2-v2 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P3 X: 4611475-4611536 [+] UCSC Ensembl
Mir-7385-P4 X: 4611934-4611995 [+] UCSC Ensembl
Mir-7385-P5a X: 4612215-4612273 [+] UCSC Ensembl
Mir-7385-P6 X: 4614575-4614633 [+] UCSC Ensembl
Mir-7385-P5b X: 4614848-4614909 [+] UCSC Ensembl
Mir-7385-P7 X: 4615421-4615479 [+] UCSC Ensembl
Mir-7385-P8 X: 4616510-4616572 [+] UCSC Ensembl
Mir-7385-P1c X: 4616788-4616846 [+] UCSC Ensembl
Mir-7385-P5c X: 4617777-4617835 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGACCUAAUCGACACCCAAGGCCCCAGUCAGGUCUGAUAGUCUAUCUUCCUGUGCUGUCAUAAAUCUUGGAGCAUAGUCUAUCCGGCCUGAAAGUGACCUUUGGCUAUCAGCUGUCAUCUA
Get precursor sequence
Structure
        10         20         30        40        50        60
UGGACCUAAUCGACACC-     CCCCAG-|      U     U    C    UGUGCUGU 
                  CAAGG       UCAGGUC GAUAG CUAU UUCC        C
                  GUUUC       AGUCCGG CUAUC GAUA GAGG        A
AUCUACUGUCGACUAUCG     CAGUGAA^      C     U    C    UUCUAAAU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7385-P4_5p*

mirBase accessionMIMAT0028832
Sequence
0- AGGUCUGAUAGUCUAUCUUCCU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-7385d-5p
Mature sequence

Mdo-Mir-7385-P4_3p

mirBase accessionMIMAT0028833
Sequence
40- GAGCAUAGUCUAUCCGGCCUGA -62
Get sequence
Proposed targets TargetScanVert: mdo-miR-7385d-3p