MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7383-P1b

Family name MIR-7383 (all species)
Seed AAGGUAC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7383-2
Paralogues Mdo-Mir-7383-P1a  Mdo-Mir-7383-P1c  Mdo-Mir-7383-P2  Mdo-Mir-7383-P3 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 22176059-22176117 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7383-P1b)
Mir-7383-P1c X: 22138231-22138289 [+] UCSC Ensembl
Mir-7383-P1b X: 22176059-22176117 [+] UCSC Ensembl
Mir-7383-P1a X: 22218615-22218673 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUCUCUCCUCCUCAUGAUUGGCGUAUUCCAAGGUACCUGAGGUCCUCUUAUUUUAUAUUGACUGUAAGAGGCUCCAGCUCCCUUUGUUUACCCCAAUAGAAAACUCCACUACCACUG
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Structure
        10          20        30        40        50         
AGCUCUCUCCUCCUCAUG--|    C   UUCC    UAC   AG U       UUUUAU 
                    AUUGG GUA    AAGG   CUG  G CCUCUUA      A
                    UAACC CAU    UUCC   GAC  C GGAGAAU      U
GUCACCAUCACCUCAAAAGA^    C   UUGU    CUC   CU -       GUCAGU 
       110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 relative to what is annoated here and which corresponds to the Dicer cut in Sarcophilus harrisii.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-7383-P1b_5p

mirBase accessionMIMAT0028822
Sequence
0- CAAGGUACCUGAGGUCCUCUUA -22
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Proposed targets TargetScanVert: mdo-miR-7383-5p
Star sequence

Mdo-Mir-7383-P1b_3p*

mirBase accessionMIMAT0028823
Sequence
38- AGAGGCUCCAGCUCCCUUUGU -59
Get sequence
Proposed targets TargetScanVert: mdo-miR-7383-3p