MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7371-P31

Family name MIR-7371 (all species)
Seed GUAAGGG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7386n
Paralogues Mdo-Mir-7371-P1  Mdo-Mir-7371-P2a  Mdo-Mir-7371-P2b  Mdo-Mir-7371-P3  Mdo-Mir-7371-P4  Mdo-Mir-7371-P5  Mdo-Mir-7371-P6  Mdo-Mir-7371-P7  Mdo-Mir-7371-P8-v1  Mdo-Mir-7371-P8-v2  Mdo-Mir-7371-P9  Mdo-Mir-7371-P10  Mdo-Mir-7371-P11a  Mdo-Mir-7371-P11b  Mdo-Mir-7371-P11c  Mdo-Mir-7371-P12  Mdo-Mir-7371-P13  Mdo-Mir-7371-P14  Mdo-Mir-7371-P15  Mdo-Mir-7371-P16  Mdo-Mir-7371-P17  Mdo-Mir-7371-P18  Mdo-Mir-7371-P19-v1  Mdo-Mir-7371-P19-v2  Mdo-Mir-7371-P20  Mdo-Mir-7371-P21  Mdo-Mir-7371-P22  Mdo-Mir-7371-P23  Mdo-Mir-7371-P24  Mdo-Mir-7371-P25  Mdo-Mir-7371-P26  Mdo-Mir-7371-P27  Mdo-Mir-7371-P28  Mdo-Mir-7371-P29  Mdo-Mir-7371-P30  Mdo-Mir-7371-P32  Mdo-Mir-7371-P33  Mdo-Mir-7371-P34  Mdo-Mir-7371-P35  Mdo-Mir-7371-P36  Mdo-Mir-7371-P37  Mdo-Mir-7371-P38  Mdo-Mir-7371-P39 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 40500913-40500970 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7371-P31)
Mir-7371-P10 X: 40471896-40471952 [+] UCSC Ensembl
Mir-7371-P11a X: 40472059-40472118 [+] UCSC Ensembl
Mir-7371-P11b X: 40472371-40472430 [+] UCSC Ensembl
Mir-7371-P11c X: 40472534-40472593 [+] UCSC Ensembl
Mir-7371-P12 X: 40472741-40472796 [+] UCSC Ensembl
Mir-7371-P13 X: 40473856-40473914 [+] UCSC Ensembl
Mir-7371-P14 X: 40474430-40474488 [+] UCSC Ensembl
Mir-7371-P15 X: 40476157-40476213 [+] UCSC Ensembl
Mir-7371-P16 X: 40478031-40478092 [+] UCSC Ensembl
Mir-7371-P17 X: 40478197-40478256 [+] UCSC Ensembl
Mir-7371-P18 X: 40479473-40479530 [+] UCSC Ensembl
Mir-7371-P19-v2 X: 40481294-40481353 [+] UCSC Ensembl
Mir-7371-P19-v1 X: 40481295-40481352 [+] UCSC Ensembl
Mir-7371-P20 X: 40481839-40481897 [+] UCSC Ensembl
Mir-7371-P21 X: 40482902-40482958 [+] UCSC Ensembl
Mir-7371-P22 X: 40484389-40484445 [+] UCSC Ensembl
Mir-7371-P23 X: 40485434-40485493 [+] UCSC Ensembl
Mir-7371-P24 X: 40485588-40485645 [+] UCSC Ensembl
Mir-7371-P25 X: 40486320-40486378 [+] UCSC Ensembl
Mir-7371-P26 X: 40488023-40488080 [+] UCSC Ensembl
Mir-7371-P27 X: 40489393-40489449 [+] UCSC Ensembl
Mir-7371-P28 X: 40491868-40491926 [+] UCSC Ensembl
Mir-7371-P29 X: 40492022-40492080 [+] UCSC Ensembl
Mir-7371-P30 X: 40497148-40497205 [+] UCSC Ensembl
Mir-7371-P31 X: 40500913-40500970 [+] UCSC Ensembl
Mir-7371-P32 X: 40502424-40502481 [+] UCSC Ensembl
Mir-7371-P34 X: 40504971-40505028 [+] UCSC Ensembl
Mir-7371-P36 X: 40506274-40506332 [+] UCSC Ensembl
Mir-7371-P37 X: 40514662-40514726 [+] UCSC Ensembl
Mir-7371-P38 X: 40516163-40516222 [+] UCSC Ensembl
Mir-7371-P39 X: 40522765-40522822 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCCAACACCAUCCCUUCCAGUAGCCCUGGGUGGAUAAGUCACUUUACUUUGUGCAUUCUUUCAAAAGUAAGGGCCUUAUCCAUAGAGGCUGCUGGGAAAGAACUUACCAGCCAAAC
Get precursor sequence
Structure
        10           20         30        40        50         
GUCCCAACACCAUCCCU---          -| GG         UCA         GUGCAU 
                    UCCAGUAGCC CU  GUGGAUAAG   CUUUACUUU      \
                    GGGUCGUCGG GA  UACCUAUUC   GGAAUGAAA      U
CAAACCGACCAUUCAAGAAA          A^ --         CG-         ACUUUC 
      110       100        90          80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut on the 5p arm -1.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7371-P31_5p*

mirBase accessionMIMAT0028864
Sequence
0- GGUGGAUAAGUCACUUUACUUU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-7386n-5p
Mature sequence

Mdo-Mir-7371-P31_3p

mirBase accessionMIMAT0028865
Sequence
37- AGUAAGGGCCUUAUCCAUAGA -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-7386n-3p