MirGeneDB ID | Mdo-Mir-340 |
Family name |
MIR-340 (all species) |
Seed |
AGUAAUG |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-340
|
Paralogues |
|
Orthologues |
Bta-Mir-340
Cfa-Mir-340
Cpo-Mir-340
Dno-Mir-340
Ete-Mir-340
Hsa-Mir-340
Mml-Mir-340
Mmu-Mir-340
Ocu-Mir-340
Rno-Mir-340-P1
Rno-Mir-340-P2
Sha-Mir-340-v1
Sha-Mir-340-v2
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (monDom5_add) |
1: 72641020-72641074 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAAUGGACGGUGAUCAAGGUGUGACUAUAAAGUAAUGAGAUUGAUUUCUGUGGUAUAGUAAAUGGAAAUCAGUUUCAUUACCUUACAGUCACAUCUAAUCUUCUACAAUGUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAAUGGACGGUGAUCA-| A A GGUA
AGGUGUGACU UAA GUAAUGAGAUUGAUUUCUGU U
UCUACACUGA AUU CAUUACUUUGACUAAAGGUA A
UGUUGUAACAUCUUCUAA^ C C AAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The Drosha cut varies between marsupials and between marsupials and eutherians. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mdo-Mir-340_5p |
mirBase accession | MIMAT0006143 |
Sequence |
0- AAGUAAUGAGAUUGAUUUCUGU -22
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-340-5p
|
Star sequence |
Mdo-Mir-340_3p* |
mirBase accession | MIMAT0026767 |
Sequence |
34- GGAAAUCAGUUUCAUUACCUU -55
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-340-3p
|