MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-181-P2a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-181b-1
Paralogues Mdo-Mir-181-P1a  Mdo-Mir-181-P1b  Mdo-Mir-181-P1c  Mdo-Mir-181-P2b  Mdo-Mir-181-P2c 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mml-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 99872881-99872941 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2a)
Mir-181-P2a 2: 99872881-99872941 [-] UCSC Ensembl
Mir-181-P1a 2: 99873079-99873140 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGCUUUAUUUUUUAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUGUAUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCACUUUAUUGCAGUCACAGGC
Get precursor sequence
Structure
        10        20          30        40        50        60 
CCAGCUUUAUUUUUUAAAAA--|      AUCAA         CUG           AACUG 
                      GGUCACA     CAUUCAUUG   UCGGUGGGUUU     U
                      CCGGUGU     GUAAGUAAC   AGUCACUCGAA     A
CGGACACUGACGUUAUUUCACC^      CAAC-         A--           CAGGU 
 .       110       100        90         80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-181-P2a_5p

mirBase accessionMIMAT0004155
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUUU -25
Get sequence
Proposed targets TargetScanVert: mdo-miR-181b-5p
Star sequence

Mdo-Mir-181-P2a_3p*

mirBase accessionMIMAT0026699
Sequence
39- GCUCACUGAACAAUGAAUGCAA -61
Get sequence
Proposed targets TargetScanVert: mdo-miR-181b-1-3p