MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-15a
Paralogues Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mdo-Mir-15-P1d  Mdo-Mir-15-P2a  Mdo-Mir-15-P2b  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mdo-Mir-15-P2d 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mml-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(monDom5_add)
4: 318199429-318199487 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1a)
Mir-15-P1a 4: 318199429-318199487 [+] UCSC Ensembl
Mir-15-P2a 4: 318199573-318199637 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUAGUAUGUAGACACCUUGGGGUAAAGUAGCAGCACAUAAUGGUUUGUUGGUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGAAU
Get precursor sequence
Structure
        10          20        30        40        50         
GAGCUAGUAUGUAGACA--|    GGGUAAAGUA        UA         UGGUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
UAAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-15-P1a_5p

mirBase accessionMIMAT0004144
Sequence
0- UAGCAGCACAUAAUGGUUUGUU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-15a-5p
Star sequence

Mdo-Mir-15-P1a_3p* (predicted)

mirBase accessionMIMAT0026689
Sequence
37- CAGGCCAUAUUGUGCUGCCUCA -59
Get sequence
Proposed targets TargetScanVert: mdo-miR-15a-3p