MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-1329
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Mun-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
1: 527897919-527897979 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGAGGACUCUUGGUCUGGUUGUAGGGGUACAGUGAUCAGGUUAUGAUGGAUUUCUCAAGUAAGCACCUCGUAGCUUGGUCACGAUAUCCAUAUGACUCAGAUGGCUGCACUUUUAGAA
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Structure
        10         20         30        40        50        60
GAGGGAGGACUCUUGGU-   -| UG  G     CA               U  AUUUCUC 
                  CUG GU  UA GGGUA  GUGAUCAGGUUAUGA GG       A
                  GAC CA  AU CCUAU  CACUGGUUCGAUGCU CC       A
AAGAUUUUCACGUCGGUA   U^ GU  A     AG               -  ACGAAUG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-1329_5p

mirBase accessionMIMAT0050144
Sequence
0- UACAGUGAUCAGGUUAUGAUGGA -23
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Star sequence

Mdo-Mir-1329_3p* (predicted)

mirBase accessionMIMAT0050145
Sequence
39- CUCGUAGCUUGGUCACGAUAUC -61
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