| MirGeneDB ID | Lgi-Novel-2 |
|---|
| Family name |
LGI-NOVEL-2 (all species) |
|---|
| Seed |
GUGAUAG |
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| Species |
Owl limpet (Lottia gigantea) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. gigantea
|
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| Node of Origin (family) |
L. gigantea
|
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Genome context
(Lotgi1) |
LOTGIsca_13: 796803-796862 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUCUAGAUUGUAAACAGCUGUCUAGAACUUGUGAUAGAGGUUGCAUUUGACUGUGUAUAACUAAUGGUAAAUGCAUCCUCUAUUACCACUUCUACGACAGACAUCCACGACAAUGAUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUCUAGAUUGUAAACAG- -| CUU U A GUGUAU
CUGUC UAGAA GUGAUAGAGG UGCAUUUG CU \
GACAG AUCUU CAUUAUCUCC ACGUAAAU GG A
AAUAGUAACAGCACCUACA C^ CAC U - UAAUCA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Lgi-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGAUAGAGGUUGCAUUUGACU -23
Get sequence
|
|---|
| Star sequence |
Lgi-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GUAAAUGCAUCCUCUAUUACCAC -60
Get sequence
|
|---|
