MirGeneDB 2.1

MirGeneDB ID

Lgi-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-1993
Paralogues
Orthologues Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Cgi-Mir-1993  Cte-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Esc-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Lotgi1)
LOTGIsca_1: 2120424-2120483 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUACUAUUGAAGUCAAAGUCUGAGUAUAUUUCGGGAAUAUAGGCAUAAUGCCCGUUAAUACUUGAACGUAUUAUGCUGAUAUUCACGAGAUCCGCUGGACAGAAUCAACAUUCAUUGGGA
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Structure
        10           20        30        40        50         
GUACUAUUGAAGUCAAA---|   G   AU      G      A          CCGUUAA 
                    GUCU AGU  AUUUCG GAAUAU GGCAUAAUGC       U
                    CAGG UCG  UAGAGC CUUAUA UCGUAUUAUG       A
AGGGUUACUUACAACUAAGA^   -   CC      A      G          CAAGUUC 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Lgi-Mir-1993_5p* (predicted)

mirBase accessionNone
Sequence
0- UCGGGAAUAUAGGCAUAAUGCC -22
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Mature sequence

Lgi-Mir-1993_3p

mirBase accessionMIMAT0009723
Sequence
38- UAUUAUGCUGAUAUUCACGAGA -60
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