MirGeneDB ID | Lan-Mir-317-P10 |
Family name |
MIR-317 (all species) |
Seed |
GAACACA |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-317-P11
|
Orthologues |
Bge-Mir-317
Cte-Mir-317
Dan-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Esc-Mir-317
Hme-Mir-317
Isc-Mir-317
Lgi-Mir-317
Npo-Mir-317
Obi-Mir-317
Ovu-Mir-317
Tca-Mir-317
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Protostomia
|
Genome context (LinAna_1.0) |
LFEI01002950: 930-993 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGGAGGACAGUUUAUUCUCAUGAAGACAAAGGUAUCACUGUGUGUUCGCAGUUUUAUGAAAACUCCUGUGAACACAGCUGGUGGUAUCUCUAUCUCCAUGAUGACUUGCAACUUUAGGAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUGGAGGACAGUUUAU- - A CAA - -| GUUUUAU
UC UCAUG AGA AGGUAUCACU G UGUGUUCGCA G
AG AGUAC UCU UCUAUGGUGG C ACACAAGUGU A
AAGAGGAUUUCAACGUUC U C AUC U G^ CCUCAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lan-Mir-317-P10_5p* |
mirBase accession | None |
Sequence |
0- AAGGUAUCACUGUGUGUUCGCA -22
Get sequence
|
Mature sequence |
Lan-Mir-317-P10_3p |
mirBase accession | None |
Sequence |
40- UGAACACAGCUGGUGGUAUCUCUA -64
Get sequence
|