MirGeneDB 2.1

MirGeneDB ID

Lan-Mir-2-o72b

Family name MIR-2 (all species)
Seed AUCACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o71  Lan-Mir-2-o72a  Lan-Mir-2-o73  Lan-Mir-2-o74  Lan-Mir-2-o75  Lan-Mir-2-o76  Lan-Mir-2-o77a  Lan-Mir-2-o77b  Lan-Mir-2-o78  Lan-Mir-2-o79 
Orthologues
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)
LFEI01000138: 117326-117383 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUGCUGCCAUCUAUUGUGGGAGACCAGCCCUCAGAGCUUCCUGUGUUAUGUUGUUUUCUGUCAUAUCACAGCCUGCUUUGAUGAGCUGUUUUACCAUGCUGACUCUGUGAUUGUCU
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Structure
        10          20        30         40        50        
ACGUGCUGCCAUCUAUU--    G   C    CC-|      UUC     U    UUGUU 
                   GUGG AGA CAGC   UCAGAGC   CUGUG UAUG     \
                   UACC UUU GUCG   AGUUUCG   GACAC AUAC     U
UCUGUUAGUGUCUCAGUCG    A   U    AGU^      UCC     U    UGUCU 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
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Star sequence

Lan-Mir-2-o72b_5p*

mirBase accessionNone
Sequence
0- CCUCAGAGCUUCCUGUGUUAUG -22
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Mature sequence

Lan-Mir-2-o72b_3p

mirBase accessionNone
Sequence
35- UAUCACAGCCUGCUUUGAUGAGC -58
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