MirGeneDB ID | Lan-Mir-1994-P3a |
Family name |
MIR-1994 (all species) |
Seed |
GAGACAG |
Species |
Lingula (Lingula anatina) |
MiRBase ID |
|
Paralogues |
Lan-Mir-1994-P3b
Lan-Mir-1994-P4a
Lan-Mir-1994-P4b
|
Orthologues |
Cte-Mir-1994
Efe-Mir-1994
|
Node of Origin (locus) |
L. anatina
|
Node of Origin (family) |
Lophotrochozoa
|
Genome context (LinAna_1.0) |
LFEI01001236: 8383-8454 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAUGGCGCUGUGAAAGGAACAUCAGUCUCAAGGAGGACUCACUAUCUGCAUUCUCCACGCAUGCGCGUUCAGUUGUUAAUGAGACAGUGUGUCCUCCCUCGGAUUGAGUUCUGCAUACAACCUGCCAAGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAUGGCGCUGUGAAAG---| A CAA U A G CUCCACGCAUGC
GAAC UCAGUCU GGAGGAC CACU UCU CAUU \
CUUG AGUUAGG CCUCCUG GUGA AGA GUAA G
GCGAACCGUCCAACAUACGU^ - CUC U C - UUGUUGACUUGC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lan-Mir-1994-P3a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AAGGAGGACUCACUAUCUGCAUU -23
Get sequence
|
Mature sequence |
Lan-Mir-1994-P3a_3p |
mirBase accession | None |
Sequence |
50- UGAGACAGUGUGUCCUCCCUCG -72
Get sequence
|