MirGeneDB 2.1

MirGeneDB ID

Lan-Mir-1994-P3a

Family name MIR-1994 (all species)
Seed GAGACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-1994-P3b  Lan-Mir-1994-P4a  Lan-Mir-1994-P4b 
Orthologues Cte-Mir-1994  Efe-Mir-1994 
Node of Origin (locus) L. anatina
Node of Origin (family) Lophotrochozoa
Genome context
(LinAna_1.0)
LFEI01001236: 8383-8454 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUGGCGCUGUGAAAGGAACAUCAGUCUCAAGGAGGACUCACUAUCUGCAUUCUCCACGCAUGCGCGUUCAGUUGUUAAUGAGACAGUGUGUCCUCCCUCGGAUUGAGUUCUGCAUACAACCUGCCAAGCG
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Structure
        10           20        30        40        50        60      
AGAUGGCGCUGUGAAAG---|   A       CAA       U    A   G    CUCCACGCAUGC 
                    GAAC UCAGUCU   GGAGGAC CACU UCU CAUU            \
                    CUUG AGUUAGG   CCUCCUG GUGA AGA GUAA            G
GCGAACCGUCCAACAUACGU^   -       CUC       U    C   -    UUGUUGACUUGC 
130       120       110        100        90         80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Lan-Mir-1994-P3a_5p* (predicted)

mirBase accessionNone
Sequence
0- AAGGAGGACUCACUAUCUGCAUU -23
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Mature sequence

Lan-Mir-1994-P3a_3p

mirBase accessionNone
Sequence
50- UGAGACAGUGUGUCCUCCCUCG -72
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