Mir-10-P1g

MirGeneDB ID

Lan-Mir-10-P1g

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Lingula (Lingula anatina)

MiRBase ID

Paralogues

Lan-Mir-10-P1h Lan-Mir-10-P2 Lan-Mir-10-P3 Lan-Mir-10-P4d Lan-Mir-10-P4e

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cgi-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lgi-Mir-10-P1 Npo-Mir-10-P1 Nve-Mir-10 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Sko-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2

Node of Origin (locus)

L. anatina

Node of Origin (family)

Eumetazoa

Genome context
(LinAna_1.0)

LFEI01000202: 129197-129254 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAUCCCAGAUCCCACUCGGCACCAUUUCUACCCUGUAGAUCCGAAUUUGUAUGAUAUUUGAAUACAAAUUCGGUCUAUAGGAUUUCAUGUGGUGUAGGUAAUUCAGCAUUUACUAC

Get precursor sequence

Structure

        10        20         30         40        50         
AAAAUCCCAGAUCCCACUCG-       UUCUAC-|       U           UGAUA 
                     GCACCAU       CCUGUAGA CCGAAUUUGUA     \
                     UGUGGUG       GGAUAUCU GGCUUAAACAU     U
CAUCAUUUACGACUUAAUGGA       UACUUUA^       -           AAGUU 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Lan-Mir-10-P1g_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGAAUUUGUA -23

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Star sequence

Lan-Mir-10-P1g_3p* (predicted)

mirBase accession

None

Sequence

36- CAAAUUCGGUCUAUAGGAUUUC -58

Get sequence