MirGeneDB ID | Isc-Mir-67 |
Family name |
MIR-67 (all species) |
Seed |
CUCACUC |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-mir-307
|
Paralogues |
|
Orthologues |
Aae-Mir-67-v1
Aae-Mir-67-v2
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cgi-Mir-67-P4
Cgi-Mir-67-P5
Cgi-Mir-67-P6
Csc-Mir-67
Cte-Mir-67
Dan-Mir-67-v1
Dan-Mir-67-v2
Dma-Mir-67
Dme-Mir-67-v1
Dme-Mir-67-v2
Dme-Mir-67-v3
Dmo-Mir-67-v1
Dmo-Mir-67-v2
Dpu-Mir-67
Dsi-Mir-67-v1
Dsi-Mir-67-v2
Dsi-Mir-67-v3
Dya-Mir-67-v1
Dya-Mir-67-v2
Dya-Mir-67-v3
Efe-Mir-67-P1
Efe-Mir-67-P2
Efe-Mir-67-P3
Hme-Mir-67-v1
Hme-Mir-67-v2
Lan-Mir-67
Lgi-Mir-67
Lpo-Mir-67-P7
Lpo-Mir-67-P8
Lpo-Mir-67-P9
Lpo-Mir-67-P10
Lpo-Mir-67-P11
Npo-Mir-67
Obi-Mir-67
Ovu-Mir-67
Sme-Mir-67
Tca-Mir-67-v1
Tca-Mir-67-v2
Tca-Mir-67-v3
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (IscaWI) |
DS911299: 1700309-1700372 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACCCGUCGUCGCUUGAGUCGGAGGGCCUUCCUCACUCAGUUUGGCUGUGGUGUAACGGGCGCUCGACCCAUCACAACCUCCUUGAGUGAGUGAGGCCUCGCCGAGCCACGCCACCCGUUGCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACCCGUCGUCGCUUGAG- A-| UC UUU C UAACGGG
UCGG GGGCCU CUCACUCAG GG UGUGGUG C
AGCC UCCGGA GAGUGAGUU CC ACACUAC G
CUCGUUGCCCACCGCACCG GC^ GU CCU A CCAGCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Mature sequence |
Isc-Mir-67_5p |
mirBase accession | None |
Sequence |
0- CCUCACUCAGUUUGGCUGUGGUG -23
Get sequence
|
Star sequence |
Isc-Mir-67_3p* |
mirBase accession | MIMAT0012701 |
Sequence |
41- UCACAACCUCCUUGAGUGAGUGA -64
Get sequence
|