MirGeneDB ID | Isc-Mir-317 |
Family name |
MIR-317 (all species) |
Seed |
GAACACA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-mir-317
|
Paralogues |
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Orthologues |
Aae-Mir-317-P8
Aae-Mir-317-P9
Bge-Mir-317
Cgi-Mir-317-P1
Cgi-Mir-317-P2
Csc-Mir-317-P17
Csc-Mir-317-P18
Cte-Mir-317
Dan-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Efe-Mir-317-P5
Efe-Mir-317-P6
Efe-Mir-317-P7
Esc-Mir-317
Hme-Mir-317
Lan-Mir-317-P10
Lan-Mir-317-P11
Lgi-Mir-317
Lpo-Mir-317-P12
Lpo-Mir-317-P13
Npo-Mir-317
Obi-Mir-317
Ovu-Mir-317
Tca-Mir-317
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (IscaWI) |
DS891538: 57439-57502 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGUGUGACUUCGACAUGGCCUCGCCUGACAGUGUACCACCCUGAGUUCCCACGUGCGUUUGCCCAGUGUGAACACAGCUGGUGGUAUAUCAGUCAGUCGCGGCAUCUACGCUUCCCUGCGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGUGUGACUUCGACAUG-- U C A- --| A C CGUGCGU
GCC CG CUGAC GUGUACCACC CUG GUUC CA \
CGG GC GACUG UAUAUGGUGG GAC CAAG GU U
GUCGCGUCCCUUCGCAUCUA C U AC UC^ A U GACCCGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Star sequence |
Isc-Mir-317_5p* |
mirBase accession | None |
Sequence |
0- AGUGUACCACCCUGAGUUCCCA -22
Get sequence
|
Mature sequence |
Isc-Mir-317_3p |
mirBase accession | MIMAT0012699 |
Sequence |
39- UGAACACAGCUGGUGGUAUAUCAGU -64
Get sequence
|