MirGeneDB 2.1

MirGeneDB ID

Isc-Mir-315

Family name MIR-315 (all species)
Seed UUUGAUU
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-315
Paralogues
Orthologues Aae-Mir-315  Bge-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Cgi-Mir-315-v1  Cgi-Mir-315-v2  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Efe-Mir-315  Esc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Lpo-Mir-315-P3  Lpo-Mir-315-P4  Lpo-Mir-315-P5  Lpo-Mir-315-P6-v1  Lpo-Mir-315-P6-v2  Npo-Mir-315  Obi-Mir-315  Ovu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Sko-Mir-315  Sme-Mir-315  Tca-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(IscaWI)
DS711462: 57353-57412 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUCGAGAUCUGCGGUACUCCUUCUCAGCUUUUGAUUGUUGCUCAGAAGGCGUGGCAAUCUGACAAGCCUUCGAGUGACUAUCAAAUCUUGUGGAGACGCCAAUUCGUCAUAUCAAGCC
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Structure
        10        20          30        40        50          
UCGUCGAGAUCUGCGGUACUC--|   U   CU      U  UG   A      GUGGCAA 
                       CUUC CAG  UUUGAU GU  CUC GAAGGC       \
                       GAGG GUU  AAACUA CA  GAG CUUCCG       U
CCGAACUAUACUGCUUAACCGCA^   U   CU      U  GU   -      AACAGUC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Al Mi Mi Mi Sa Sa Sa Sa To
Mature sequence

Isc-Mir-315_5p

mirBase accessionMIMAT0012698
Sequence
0- UUUUGAUUGUUGCUCAGAAGGCG -23
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Star sequence

Isc-Mir-315_3p*

mirBase accessionNone
Sequence
38- CCUUCGAGUGACUAUCAAAUCU -60
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