Mir-281

MirGeneDB ID

Isc-Mir-281

Family name

MIR-281 (all species)

Seed

AGAGAGC

Species

Deer tick (Ixodes scapularis)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-281 Asu-Mir-281 Bfl-Mir-281 Bge-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cbr-Mir-281-P3 Cbr-Mir-281-P4 Cel-Mir-281-P3 Cel-Mir-281-P4 Cgi-Mir-281 Cin-Mir-281 Cmi-Mir-281-v1 Cmi-Mir-281-v2 Csc-Mir-281 Cte-Mir-281 Dan-Mir-281-P1-v1 Dan-Mir-281-P1-v2 Dan-Mir-281-P2-v1 Dan-Mir-281-P2-v2 Dma-Mir-281 Dme-Mir-281-P1-v1 Dme-Mir-281-P1-v2 Dme-Mir-281-P2-v1 Dme-Mir-281-P2-v2 Dmo-Mir-281-P1-v1 Dmo-Mir-281-P1-v2 Dmo-Mir-281-P2-v1 Dmo-Mir-281-P2-v2 Dpu-Mir-281 Dsi-Mir-281-P1-v1 Dsi-Mir-281-P1-v2 Dsi-Mir-281-P2-v1 Dsi-Mir-281-P2-v2 Dya-Mir-281-P1-v1 Dya-Mir-281-P1-v2 Dya-Mir-281-P2-v1 Dya-Mir-281-P2-v2 Ebu-Mir-281 Efe-Mir-281-P5 Efe-Mir-281-P6 Efe-Mir-281-P7 Esc-Mir-281 Hme-Mir-281 Lan-Mir-281-P9 Lan-Mir-281-P10 Lgi-Mir-281-P8 Lgi-Mir-281-P9 Lpo-Mir-281-P13 Lpo-Mir-281-P14 Lpo-Mir-281-P15 Lpo-Mir-281-P16 Lpo-Mir-281-P17 Npo-Mir-281 Obi-Mir-281 Ovu-Mir-281 Pfl-Mir-281 Pma-Mir-281-P11 Pma-Mir-281-P12 Sko-Mir-281 Sme-Mir-281 Sto-Mir-281 Tca-Mir-281

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(IscaWI)

1716747454: 337-400 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAGCGACCAGGCGAGGCGGCCUGCUCCCGAAAGAGAGCAAUCCGUGGACAGUGUGUAUGUCCGAAAUGGAACUGUCAUGGAGUCGCUCUCUUUCGGGCGGGGCUCGCGGUACGCUAGCGAAAAA

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Structure

        10           20        30        40         50        60 
AAGCGACCAGGCGAGGC---|    GCU             AA-      G     GUGUAUGU 
                    GGCCU   CCCGAAAGAGAGC   UCCGUG ACAGU        C
                    UCGGG   GGGCUUUCUCUCG   AGGUAC UGUCA        C
AAAAAGCGAUCGCAUGGCGC^    GC-             CUG      -     AGGUAAAG 
  120       110       100         90        80         70

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UGUG in loop

Tissue expression

Al	Mi	Mi	Mi	Sa	Sa	Sa	Sa	To

Mature sequence

Isc-Mir-281_5p

mirBase accession

None

Sequence

0- AAGAGAGCAAUCCGUGGACAGU -22

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Star sequence

Isc-Mir-281_3p*

mirBase accession

None

Sequence

42- UGUCAUGGAGUCGCUCUCUUUC -64

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