MirGeneDB 2.1

MirGeneDB ID

Isc-Mir-190

Family name MIR-190 (all species)
Seed CCAGGAG
Species Deer tick (Ixodes scapularis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Aca-Mir-190-P3  Ami-Mir-190-P1  Ami-Mir-190-P3  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Bta-Mir-190-P3  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cfa-Mir-190-P3  Cgi-Mir-190  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cmi-Mir-190-P3  Cpi-Mir-190-P1  Cpi-Mir-190-P3  Cpo-Mir-190-P1  Cpo-Mir-190-P3  Csc-Mir-190-P18  Csc-Mir-190-P19  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dno-Mir-190-P3  Dpu-Mir-190  Dre-Mir-190-P1b  Dre-Mir-190-P3  Dsi-Mir-190  Dya-Mir-190  Ebu-Mir-190-P5  Ebu-Mir-190-P6  Efe-Mir-190-P9  Efe-Mir-190-P10  Efe-Mir-190-P11  Efe-Mir-190-P12  Esc-Mir-190  Ete-Mir-190-P1  Ete-Mir-190-P3  Gga-Mir-190-P1  Gga-Mir-190-P3  Gja-Mir-190-P1  Gja-Mir-190-P3  Gmo-Mir-190-P1a  Gmo-Mir-190-P1b  Gmo-Mir-190-P3  Hme-Mir-190  Hsa-Mir-190-P1  Hsa-Mir-190-P3  Lan-Mir-190-P7  Lan-Mir-190-P8  Lch-Mir-190-P1  Lch-Mir-190-P3  Lgi-Mir-190-v1  Lgi-Mir-190-v2  Loc-Mir-190-P1  Lpo-Mir-190-P14  Lpo-Mir-190-P15  Lpo-Mir-190-P16  Lpo-Mir-190-P17  Mal-Mir-190-P1a  Mal-Mir-190-P1b  Mal-Mir-190-P3  Mdo-Mir-190-P1  Mdo-Mir-190-P3  Mml-Mir-190-P1  Mml-Mir-190-P3  Mmu-Mir-190-P1  Mmu-Mir-190-P3  Mun-Mir-190-P1  Npo-Mir-190  Oan-Mir-190-P1  Oan-Mir-190-P3  Obi-Mir-190  Ocu-Mir-190-P1  Ocu-Mir-190-P3  Ovu-Mir-190  Pbv-Mir-190-P1  Pbv-Mir-190-P3  Pfl-Mir-190  Pma-Mir-190-o1  Pma-Mir-190-o2  Pma-Mir-190-o3  Pmi-Mir-190  Rno-Mir-190-P1c  Rno-Mir-190-P1d  Rno-Mir-190-P3  Sha-Mir-190-P1  Sha-Mir-190-P3  Sko-Mir-190  Sme-Mir-190-P20  Sme-Mir-190-P21  Sme-Mir-190-P22  Spt-Mir-190-P1  Spt-Mir-190-P3  Sto-Mir-190-P1  Sto-Mir-190-P3  Tca-Mir-190  Tgu-Mir-190-P1  Tgu-Mir-190-P3  Tni-Mir-190-P1a  Tni-Mir-190-P1b  Tni-Mir-190-P3  Xbo-Mir-190  Xla-Mir-190-P3a  Xla-Mir-190-P3b  Xtr-Mir-190-P3 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(IscaWI)
DS969850: 171552-171609 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGCACGCGGCAGACGUCCAGUGGCCGCGAGAUAUGUUUGAUAUUCUUGGUUGUGCCACGAACCAACCAGGAGUCAGACAUAUGCUCGCGGAGCUGGUCCCAUCACCGACGGCGGAG
Get precursor sequence
Structure
        10          20        30         40        50         
GGAGCACGCGGCAGACGU--|    GG       -           AU         UGCC 
                    CCAGU  CCGCGAG AUAUGUUUGAU  UCUUGGUUG    A
                    GGUCG  GGCGCUC UAUACAGACUG  AGGACCAAC    C
GAGGCGGCAGCCACUACCCU^    A-       G           --         CAAG 
      110       100         90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Al Mi Mi Mi Sa Sa Sa Sa To
Star sequence

Isc-Mir-190_5p*

mirBase accessionNone
Sequence
0- AGAUAUGUUUGAUAUUCUUGGUUG -24
Get sequence
Mature sequence

Isc-Mir-190_3p

mirBase accessionNone
Sequence
36- ACCAGGAGUCAGACAUAUGCUC -58
Get sequence