Mir-506-P6a1

MirGeneDB ID

Hsa-Mir-506-P6a1

Family name

MIR-506 (all species)

Seed

UCACAGG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-513a-1

Paralogues

Hsa-Mir-506-P1 Hsa-Mir-506-P2 Hsa-Mir-506-P3 Hsa-Mir-506-P4a1 Hsa-Mir-506-P4a2 Hsa-Mir-506-P4b Hsa-Mir-506-P5 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P7a Hsa-Mir-506-P7b Hsa-Mir-506-P7c Hsa-Mir-506-P8 Hsa-Mir-506-P9 Hsa-Mir-506-P10 Hsa-Mir-506-P11 Hsa-Mir-506-P12 Hsa-Mir-506-P13 Hsa-Mir-506-P29

Orthologues

Bta-Mir-506-P6 Cpo-Mir-506-o6 Cpo-Mir-506-P6 Mml-Mir-506-P6a Ocu-Mir-506-P6 Rno-Mir-506-P6

Node of Origin (locus)

H. sapiens

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147225860-147225917 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6a1)

Mir-506-P6c chrX: 147189717-147189774 [-] UCSC Ensembl
Mir-506-P6b chrX: 147199057-147199114 [-] UCSC Ensembl
Mir-506-P6a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P6a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P1 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2 chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P8 chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P4a2 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P4b chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P4a1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P5 chrX: 147272342-147272399 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCCAUUCAGUGUGCAGUGCCUUUCACAGGGAGGUGUCAUUUAUGUGAACUAAAAUAUAAAUUUCACCUUUCUGAGAAGGGUAAUGUACAGCAUGCACUGCAUAUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAUUCAGCCAUUCAG--|     G        A   GG     UC       UGAA 
                    UGUGCA UGCCUUUC CAG  AGGUG  AUUUAUG    C
                    ACAUGU AUGGGAAG GUC  UCCAC  UAAAUAU    U
UGGUGUAUACGUCACGUACG^     A        A   UU     UU       AAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-506-P6a1_5p

mirBase accession

MIMAT0002877

Sequence

0- UUCACAGGGAGGUGUCAUUUAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0002877
TargetScanVert: hsa-miR-513a-5p
TargetMiner: hsa-miR-513a-5p
miRDB: MIMAT0002877

Star sequence

Hsa-Mir-506-P6a1_3p*

mirBase accession

MIMAT0004777

Sequence

35- UAAAUUUCACCUUUCUGAGAAGG -58

Get sequence

Proposed targets

microrna.org: MIMAT0004777
TargetScanVert: hsa-miR-513a-3p
TargetMiner: hsa-miR-513a-3p
miRDB: MIMAT0004777