Mir-506-P3

MirGeneDB ID

Hsa-Mir-506-P3

Family name

MIR-506 (all species)

Seed

GAUUGUA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-508

Paralogues

Hsa-Mir-506-P1 Hsa-Mir-506-P2 Hsa-Mir-506-P4a1 Hsa-Mir-506-P4a2 Hsa-Mir-506-P4b Hsa-Mir-506-P5 Hsa-Mir-506-P6a1 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P7a Hsa-Mir-506-P7b Hsa-Mir-506-P7c Hsa-Mir-506-P8 Hsa-Mir-506-P9 Hsa-Mir-506-P10 Hsa-Mir-506-P11 Hsa-Mir-506-P12 Hsa-Mir-506-P13 Hsa-Mir-506-P29

Orthologues

Bta-Mir-506-P3 Cfa-Mir-506-P3a Cfa-Mir-506-P3b Cpo-Mir-506-o3 Dno-Mir-506-P3 Mml-Mir-506-P3 Ocu-Mir-506-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147236945-147237002 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P3)

Mir-506-P6c chrX: 147189717-147189774 [-] UCSC Ensembl
Mir-506-P6b chrX: 147199057-147199114 [-] UCSC Ensembl
Mir-506-P6a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P6a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P1 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2 chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P8 chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P4a2 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P4b chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P4a1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P5 chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P7a chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P7c chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P7b chrX: 147284655-147284712 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCCACCACCUUCAGCUGAGUGUAGUGCCCUACUCCAGAGGGCGUCACUCAUGUAAACUAAAACAUGAUUGUAGCCUUUUGGAGUAGAGUAAUACACAUCACGUAACGCAUAUUUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
AGCCACCACCUUCAGCU-  -|    G   C              GU  C     UAAA 
                  GA GUGUA UGC CUACUCCAGAGGGC  CA UCAUG    C
                  CU CACAU AUG GAUGAGGUUUUCCG  GU AGUAC    U
UGGUUUAUACGCAAUGCA  A^    A   A              AU  U     AAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-506-P3_5p*

mirBase accession

MIMAT0004778

Sequence

0- UACUCCAGAGGGCGUCACUCAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0004778
TargetScanVert: hsa-miR-508-5p
TargetMiner: hsa-miR-508-5p
miRDB: MIMAT0004778

Mature sequence

Hsa-Mir-506-P3_3p

mirBase accession

MIMAT0002880

Sequence

35- UGAUUGUAGCCUUUUGGAGUAGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0002880
TargetScanVert: hsa-miR-508-3p
TargetMiner: hsa-miR-508-3p
miRDB: MIMAT0002880