MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-504-v2

Family name MIR-504 (all species)
Seed ACCCUGG
Species Human (Homo sapiens)
MiRBase ID hsa-mir-504
Paralogues Hsa-Mir-504-v1 
Orthologues Bta-Mir-504  Cfa-Mir-504-v2  Cpo-Mir-504-v2  Dno-Mir-504-v2  Ete-Mir-504-v2  Mml-Mir-504-v2  Mmu-Mir-504-v2  Ocu-Mir-504-v2  Rno-Mir-504-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)
chrX: 138667724-138667780 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-504-v2)
Mir-504-v1 chrX: 138667723-138667781 [-] UCSC Ensembl
Mir-504-v2 chrX: 138667724-138667780 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGAAUGUUGAAUCAGCUGCUGUUGGGAGACCCUGGUCUGCACUCUAUCUGUAUUCUUACUGAAGGGAGUGCAGGGCAGGGUUUCCCAUACAGAGGGCACAGACUACCACCGUAU
Get precursor sequence
Structure
        10         20         30        40         50       
AGUGGAAUGUUGAAUCAG-  G    -            G          A-| UGUAU 
                   CU CUGU UGGGAGACCCUG UCUGCACUCU  UC     U
                   GG GACA ACCCUUUGGGAC GGACGUGAGG  AG     C
UAUGCCACCAUCAGACACG  A    U            G          GA^ UCAUU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts +1 and +2.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-504-v2_5p

mirBase accessionMIMAT0002875
Sequence
0- GACCCUGGUCUGCACUCUAUC -21
Get sequence
Proposed targets microrna.org: MIMAT0002875
miRDB: MIMAT0002875
Star sequence

Hsa-Mir-504-v2_3p*

mirBase accessionMIMAT0026612
Sequence
36- GGGAGUGCAGGGCAGGGUUUC -57
Get sequence
Proposed targets TargetScanVert: hsa-miR-504-3p
miRDB: MIMAT0026612