MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Human (Homo sapiens)
MiRBase ID hsa-mir-424
Paralogues Hsa-Mir-15-P1a  Hsa-Mir-15-P1b  Hsa-Mir-15-P1d  Hsa-Mir-15-P2a  Hsa-Mir-15-P2b  Hsa-Mir-15-P2c  Hsa-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(hg38)
chrX: 134546643-134546701 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-450-P3 chrX: 134540195-134540252 [-] UCSC Ensembl
Mir-450-P2 chrX: 134540358-134540414 [-] UCSC Ensembl
Mir-450-P1 chrX: 134540529-134540585 [-] UCSC Ensembl
Mir-542-v1 chrX: 134541364-134541422 [-] UCSC Ensembl
Mir-542-v2 chrX: 134541365-134541421 [-] UCSC Ensembl
Mir-15-P2c chrX: 134546331-134546393 [-] UCSC Ensembl
Mir-15-P1c chrX: 134546643-134546701 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUCCCCCUUCAUUGACUCCGAGGGGAUACAGCAGCAAUUCAUGUUUUGAAGUGUUCUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGUGGGGAAGGUAGAAGGUGGGGU
Get precursor sequence
Structure
        10         20         30        40        50         
CGAUCCCCCUUCAUUGA-   -|      A  C      AA             GUGUUC 
                  CUC CGAGGGG UA AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UGGGGUGGAAGAUGGAAG   U^      C  A      CG             GGUAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-15-P1c_5p

mirBase accessionMIMAT0001341
Sequence
0- CAGCAGCAAUUCAUGUUUUGAA -22
Get sequence
Proposed targets microrna.org: MIMAT0001341
TargetScanVert: hsa-miR-424-5p
TargetMiner: hsa-miR-424-5p
miRDB: MIMAT0001341
Star sequence

Hsa-Mir-15-P1c_3p*

mirBase accessionMIMAT0004749
Sequence
37- CAAAACGUGAGGCGCUGCUAUA -59
Get sequence
Proposed targets microrna.org: MIMAT0004749
TargetScanVert: hsa-miR-424-3p
TargetMiner: hsa-miR-424-3p
miRDB: MIMAT0004749