MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Human (Homo sapiens)
MiRBase ID hsa-mir-125a
Paralogues Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Hsa-Mir-10-P1c-v1  Hsa-Mir-10-P1c-v2  Hsa-Mir-10-P2b  Hsa-Mir-10-P2c  Hsa-Mir-10-P2d  Hsa-Mir-10-P3c  Hsa-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(hg38)
chr19: 51693268-51693327 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)
Mir-10-P2b chr19: 51692618-51692677 [+] UCSC Ensembl
Let-7-P1b chr19: 51692793-51692859 [+] UCSC Ensembl
Mir-10-P3b chr19: 51693268-51693327 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCGCACACCAUGUUGCCAGUCUCUAGGUCCCUGAGACCCUUUAACCUGUGAGGACAUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCCCAACCACACACCUGGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60
CCACCGCACACCAUGUU--|    UCU     UC  UG   C    UA        GGACA 
                   GCCAG   CUAGG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   GGUCC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCACACACCAACC^    UGC     GA  GU   U    --        GGGAC 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-10-P3b_5p

mirBase accessionMIMAT0000443
Sequence
0- UCCCUGAGACCCUUUAACCUGUGA -24
Get sequence
Proposed targets microrna.org: MIMAT0000443
TargetScanVert: hsa-miR-125a-5p
TargetMiner: hsa-miR-125a-5p
miRDB: MIMAT0000443
Star sequence

Hsa-Mir-10-P3b_3p*

mirBase accessionMIMAT0004602
Sequence
38- ACAGGUGAGGUUCUUGGGAGCC -60
Get sequence
Proposed targets microrna.org: MIMAT0004602
TargetScanVert: hsa-miR-125a-3p
TargetMiner: hsa-miR-125a-3p
miRDB: MIMAT0004602