MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-988

Family name MIR-988 (all species)
Seed CCCUUGU
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID
Paralogues
Orthologues Aae-Mir-988  Dan-Mir-988  Dme-Mir-988  Dmo-Mir-988  Dsi-Mir-988  Dya-Mir-988 
Node of Origin (locus) Diptera plus Lepidoptera
Node of Origin (family) Diptera plus Lepidoptera
Genome context
(Hmel_1)
HE672081: 475628-475688 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAAGAAGAAAAUAUGCAACUGCCCAUAGUGUGCGUUGUAGCAAAGGAGAUCAAAUGGUUGUACCAUCCCCUUGUUACAAACCUCACUUUGGUUCUUUGCACAAUCCAACAACAACAUU
Get precursor sequence
Structure
        10          20        30        40        50        60
AAGAAAGAAGAAAAUAU--|   CUGC   U    UGCG         A  A   CAAAUG 
                   GCAA    CCA AGUG    UUGUAGCAA GG GAU      G
                   CGUU    GGU UCAC    AACAUUGUU CC CUA      U
UUACAACAACAACCUAACA^   UCUU   U    UCCA         C  -   CCAUGU 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-988_5p*

mirBase accessionNone
Sequence
0- GUGUGCGUUGUAGCAAAGGAGAU -23
Get sequence
Mature sequence

Hme-Mir-988_3p

mirBase accessionNone
Sequence
39- CCCCUUGUUACAAACCUCACUU -61
Get sequence