MirGeneDB ID | Hme-Mir-279-o34 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
hme-mir-279c
|
Paralogues |
Hme-Mir-279-o31
Hme-Mir-279-o32
Hme-Mir-279-o33
|
Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
Protostomia
|
Genome context (Hmel_1) |
HE671887: 111974-112030 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGCAUGAGUGUGAGUGACAGCUUCGGAAGAUGGGUGAAUUUCUAGUGUCAAGUUACGGAACCUUGACUAGAUUUUCACUUAUCCUUUGCGGCUGUCUUUACCUGCUUUUUUGUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGCAUGAGUGUGAGU--| U A UU GU UUAC
GACAGCU CGGA GAUGGGUGAA UCUA GUCAAG \
CUGUCGG GUUU CUAUUCACUU AGAU CAGUUC G
GUUGUUUUUUCGUCCAUUU^ C C UU -- CAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hme-Mir-279-o34_5p* |
mirBase accession | None |
Sequence |
0- GAUGGGUGAAUUUCUAGUGUCAAG -24
Get sequence
|
Mature sequence |
Hme-Mir-279-o34_3p |
mirBase accession | MIMAT0024966 |
Sequence |
35- UGACUAGAUUUUCACUUAUCCU -57
Get sequence
|