MirGeneDB ID | Hme-Mir-278 |
Family name |
MIR-278 (all species) |
Seed |
CGGUGGG |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
hme-mir-278
|
Paralogues |
|
Orthologues |
Aae-Mir-278
Bfl-Mir-278
Bge-Mir-278
Bla-Mir-278
Cgi-Mir-278
Csc-Mir-278
Cte-Mir-278
Dan-Mir-278
Dma-Mir-278
Dme-Mir-278
Dmo-Mir-278
Dpu-Mir-278
Dsi-Mir-278
Dya-Mir-278
Efe-Mir-278-P1-v1
Efe-Mir-278-P1-v2
Efe-Mir-278-P2
Esc-Mir-278
Isc-Mir-278
Lan-Mir-278
Lgi-Mir-278
Lpo-Mir-278-P3
Lpo-Mir-278-P4
Lpo-Mir-278-P5
Npo-Mir-278
Obi-Mir-278
Ovu-Mir-278
Pfl-Mir-278
Pmi-Mir-278
Sko-Mir-278
Sme-Mir-278
Spu-Mir-278
Xbo-Mir-278
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Hmel_1) |
HE671244: 255776-255833 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAAAGAAGAACAGUAUCAAGUGCUACGCCCGGACGAACUUCCCAGAUCGGCCGACACAAAGUGGUCGGUGGGAUCUUCGUCCGUUUGUAUCGCUUAUACGUGUAUUCAUCAUACAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGAAAGAAGAACAGUAUC--| C CC CU GA GACA
AAGUG UACG CGGACGAA UCCCA UCGGCC C
UUCGC AUGU GCCUGCUU AGGGU GGCUGG A
AACAUACUACUUAUGUGCAUA^ U UU CU -- UGAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hme-Mir-278_5p* |
mirBase accession | None |
Sequence |
0- CCGGACGAACUUCCCAGAUCGGCC -24
Get sequence
|
Mature sequence |
Hme-Mir-278_3p |
mirBase accession | MIMAT0024960 |
Sequence |
36- UCGGUGGGAUCUUCGUCCGUUU -58
Get sequence
|