MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-2797
Paralogues Hme-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Hmel_1)
HE669201: 24262-24317 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1)
Mir-252-P2 HE669201: 11729-11788 [-] Ensembl
Mir-252-P1 HE669201: 24262-24317 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAUAUUCUAUAUAAAACUGCUUUCUUUAUAAGUAGACCAUGUCCGGCUUUUACACUAUUAAGCCGAACUACGUCUCCUUAUACAGGUAUCAGUUACUGACGCCGAUGUGAAAA
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Structure
        10          20        30        40        50       
AAAAAUAUUCUAUAUAA--|    CUU   U      U    CAU  C      UUAC 
                   AACUG   UCU UAUAAG AGAC   GU CGGCUU    A
                   UUGAC   GGA AUAUUC UCUG   CA GCCGAA    C
AAAAGUGUAGCCGCAGUCA^    UAU   C      C    CAU  A      UUAU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-252-P1_5p

mirBase accessionMIMAT0024963
Sequence
0- AUAAGUAGACCAUGUCCGGCUU -22
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Star sequence

Hme-Mir-252-P1_3p* (predicted)

mirBase accessionNone
Sequence
34- GCCGAACUACGUCUCCUUAUAC -56
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