MirGeneDB ID | Gga-Mir-9-P3 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-9-4
|
Paralogues |
Gga-Mir-9-P1
Gga-Mir-9-P2
Gga-Mir-9-P4
|
Orthologues |
Ami-Mir-9-P3
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Bta-Mir-9-P3
Cfa-Mir-9-P3
Cin-Mir-9
Cli-Mir-9-P3
Cpi-Mir-9-P3
Cpo-Mir-9-P3
Cte-Mir-9
Dno-Mir-9-P3
Dre-Mir-9-P3a
Esc-Mir-9
Ete-Mir-9-P3
Gja-Mir-9-P3
Gmo-Mir-9-P3a
Gmo-Mir-9-P3b
Hme-Mir-9-o3
Hsa-Mir-9-P3
Isc-Mir-9
Lan-Mir-9
Lch-Mir-9-P3
Lgi-Mir-9
Loc-Mir-9-P3
Mal-Mir-9-P3a
Mal-Mir-9-P3b
Mdo-Mir-9-P3
Mml-Mir-9-P3
Mmu-Mir-9-P3
Mun-Mir-9-P3
Npo-Mir-9
Oan-Mir-9-P3-v1
Oan-Mir-9-P3-v2
Obi-Mir-9
Ocu-Mir-9-P3
Ovu-Mir-9
Pbv-Mir-9-P3
Pma-Mir-9-o3
Pmi-Mir-9
Rno-Mir-9-P3
Sha-Mir-9-P3
Spt-Mir-9-P3
Spu-Mir-9
Tgu-Mir-9-P3
Tni-Mir-9-P3a
Tni-Mir-9-P3b
Xbo-Mir-9
Xla-Mir-9-P3c
Xla-Mir-9-P3d
Xtr-Mir-9-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
25: 2723420-2723481 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGCUGUAGACUUCAGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUCGAUUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUUACACGCCUGAGGAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUGCUGUAGACUUCAG---| GUUG UC G GUGGUG
GGGUUG UUA UUUGGUUAUCUAGCU UAUGA U
CCCAAU AAU AAGCCAAUAGAUCGA AUACU C
AGGAGGAGUCCGCACAUUAC^ AAA- GA A UCUUAG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Ch |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Mir-9-P3_5p |
mirBase accession | MIMAT0001195 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Gga-Mir-9-P3_3p* |
mirBase accession | MIMAT0048671 |
Sequence |
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
|