MirGeneDB 2.1
MirGeneDB ID

Gga-Mir-551-P2

Family name MIR-551 (all species)
Seed CGACCCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-551
Paralogues
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Ete-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 9: 20573635-20573695 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUUCCACCAGAGCUGCCCCAUGGCUCCAGAAAUCAAGGGUGGGUAAGACCUUGUAGGAUAACUGGCAGGCGACCCAUACUUGGUUUCAGGGGCUGUGUGGGUAUCGUCAGUGGUGGUUA
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Structure
        10         20         30        40        50        60 
GCAUUCCACCAGAGCUG-   -|        A         GG     AAGA   UGUAGGA 
                  CCC CAUGGCUCC GAAAUCAAG  UGGGU    CCU       \
                  GGG GUGUCGGGG CUUUGGUUC  ACCCA    GGA       U
AUUGGUGGUGACUGCUAU   U^        A         AU     GC--   CGGUCAA 
 .       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-551-P2_5p*
mirBase accessionMIMAT0007289
Sequence 
0- GAAAUCAAGGGUGGGUAAGACCU -23
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Proposed targets TargetScanVert: gga-miR-551-5p
miRDB: MIMAT0007289
Mature sequence

Gga-Mir-551-P2_3p
mirBase accessionMIMAT0007290
Sequence 
40- GCGACCCAUACUUGGUUUCAG -61
Get sequence
Proposed targets TargetScanVert: gga-miR-551-3p
miRDB: MIMAT0007290