Mir-30-P1b

MirGeneDB ID

Gga-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-30a

Paralogues

Gga-Mir-30-P1a Gga-Mir-30-P1d Gga-Mir-30-P2a Gga-Mir-30-P2b Gga-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Ete-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

3: 82345435-82345498 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P1b 3: 82345435-82345498 [+] UCSC Ensembl
Mir-30-P2b 3: 82370050-82370111 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUGUGUAUUGCUGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCCACAGACGUCAAGAAAUGUU

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAAUGUGUAUUGCUGUU--|A    GA   A            UC           GUGAAGC 
                   G CAGU  GCG CUGUAAACAUCC  GACUGGAAGCU       A
                   C GUCA  CGU GACGUUUGUAGG  CUGACUUUCGG       G
UUGUAAAGAACUGCAGACA^C    AC   C            --           GGUAGAC 
  120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-30-P1b_5p

mirBase accession

MIMAT0001135

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-30a-5p
miRDB: MIMAT0001135

Star sequence

Gga-Mir-30-P1b_3p*

mirBase accession

MIMAT0001136

Sequence

42- CUUUCAGUCGGAUGUUUGCAGC -64

Get sequence

Proposed targets

TargetScanVert: gga-miR-30a-3p
miRDB: MIMAT0001136