Mir-30-P1a

MirGeneDB ID

Gga-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-30d

Paralogues

Gga-Mir-30-P1b Gga-Mir-30-P1d Gga-Mir-30-P2a Gga-Mir-30-P2b Gga-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Ete-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

2: 142647738-142647796 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a 2: 142644205-142644264 [-] UCSC Ensembl
Mir-30-P1a 2: 142647738-142647796 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACCUGCAGUGAUGUAUAGUAGUCUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUAGCAGCUUGAGCUUUCAGUCAGAUGUUUGCUGCACCUGGCUAUACCUGGACAGCAUCAGGAGG

Get precursor sequence

Structure

        10          20        30        40        50          
CACCUGCAGUGAUGUAUA--|     UGU   U         CCC           GUAGC 
                    GUAGUC   UGC GUAAACAUC   GACUGGAAGCU     \
                    UAUCGG   ACG CGUUUGUAG   CUGACUUUCGA     A
GGAGGACUACGACAGGUCCA^     UCC   U         A--           GUUCG 
       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-30-P1a_5p

mirBase accession

MIMAT0001129

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

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Proposed targets

TargetScanVert: gga-miR-30d
miRDB: MIMAT0001129

Star sequence

Gga-Mir-30-P1a_3p*

mirBase accession

None

Sequence

37- CUUUCAGUCAGAUGUUUGCUGC -59

Get sequence