MirGeneDB 2.1
MirGeneDB ID

Gga-Mir-1550

Family name MIR-1550 (all species)
Seed GAUGGGG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1550
Paralogues
Orthologues
Node of Origin (locus) G. gallus
Node of Origin (family) G. gallus
Genome context
(Gallus_gallus.GRCg6a)		 12: 13251466-13251522 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCACAGCCAGACCUGUGCAGGCUUGGGCUGAUGGGGGUGUAGUGCAGCAGCUAUUUAUCAUGCUUCACUUACACUGCUCACUGGUCUAAGCUGCACCACCCGGGAAAUAUCUUGG
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Structure
        10           20        30         40         50       
UUCCACAGCCAGACCUG---    G         GA    -     -|   C    GCUAU 
                    UGCA GCUUGGGCU  UGGG GGUGU AGUG AGCA     \
                    ACGU CGAAUCUGG  ACUC UCACA UCAC UCGU     U
GGUUCUAUAAAGGGCCCACC    -         UC    G     U^   U    ACUAU 
     110       100         90        80        70        60
Deep sequencing
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CommentAlthough this locus is present throughout birds only in G. gallus does it fold properly and no reads were found in our pigeon library thus it is here considered Gallus specific pending more read data across the group.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-1550_5p
mirBase accessionMIMAT0007403
Sequence 
0- UGAUGGGGGUGUAGUGCAGCA -21
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Proposed targets TargetScanVert: gga-miR-1550-5p
miRDB: MIMAT0007403
Star sequence

Gga-Mir-1550_3p*
mirBase accessionMIMAT0007404
Sequence 
34- CUUCACUUACACUGCUCACUGGU -57
Get sequence
Proposed targets TargetScanVert: gga-miR-1550-3p
miRDB: MIMAT0007404