Mir-146-P1

MirGeneDB ID

Gga-Mir-146-P1

Family name

MIR-146 (all species)

Seed

GAGAACU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-146b

Paralogues

Gga-Mir-146-P2 Gga-Mir-146-P4

Orthologues

Aca-Mir-146-P1 Ami-Mir-146-P1 Bta-Mir-146-P1 Cfa-Mir-146-P1 Cli-Mir-146-P1 Cmi-Mir-146-P1 Cpi-Mir-146-P1 Cpo-Mir-146-P1 Dno-Mir-146-P1 Dre-Mir-146-P1 Ebu-Mir-146 Ete-Mir-146-P1 Gja-Mir-146-P1 Gmo-Mir-146-P1 Hsa-Mir-146-P1 Lch-Mir-146-P1 Loc-Mir-146-P1 Mal-Mir-146-P1 Mdo-Mir-146-P1 Mml-Mir-146-P1 Mmu-Mir-146-P1 Mun-Mir-146-P1 Oan-Mir-146-P1 Ocu-Mir-146-P1 Pbv-Mir-146-P1 Pma-Mir-146 Rno-Mir-146-P1 Sha-Mir-146-P1 Spt-Mir-146-P1 Tgu-Mir-146-P1 Tni-Mir-146-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

6: 24096341-24096401 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAAGCCAGCGAGGACUGGCUGCUUGGCUUUGAGAACUGAAUUCCAUAGGCGUUAAAGCAUCCAAAAAUGCCCUAUGGAUUCAGUUCUGCAGUUGGGCAGCAAAUAAACCUCCAGCCUUCA

Get precursor sequence

Structure

        10          20        30        40        50         60
GGAAGCCAGCGAGGACUG--|     UG   UUG          U       -    AAAGC 
                    GCUGCU  GCU   AGAACUGAAU CCAUAGG CGUU     A
                    CGACGG  UGA   UCUUGACUUA GGUAUCC GUAA     U
ACUUCCGACCUCCAAAUAAA^     GU   CG-          -       C    AAACC 
 .       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-146-P1_5p

mirBase accession

MIMAT0003351

Sequence

0- UGAGAACUGAAUUCCAUAGGCGUU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-146b-5p
miRDB: MIMAT0003351

Star sequence

Gga-Mir-146-P1_3p*

mirBase accession

MIMAT0003724

Sequence

38- UGCCCUAUGGAUUCAGUUCUGCA -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-146b-3p
miRDB: MIMAT0003724