MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-138-P2

Family name MIR-138 (all species)
Seed GCUGGUG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-138-2
Paralogues Gga-Mir-138-P1 
Orthologues Aca-Mir-138-P2  Ami-Mir-138-P2  Bta-Mir-138-P2  Cfa-Mir-138-P2  Cli-Mir-138-P2  Cmi-Mir-138-P2  Cpi-Mir-138-P2  Cpo-Mir-138-P2  Dno-Mir-138-P2  Dre-Mir-138-P2  Ete-Mir-138-P2  Gja-Mir-138-P2  Gmo-Mir-138-P2  Hsa-Mir-138-P2  Lch-Mir-138-P2  Loc-Mir-138-P2  Mal-Mir-138-P2  Mdo-Mir-138-P2  Mml-Mir-138-P2  Mmu-Mir-138-P2  Oan-Mir-138-P2  Ocu-Mir-138-P2  Pbv-Mir-138-P2  Pma-Mir-138-o2  Rno-Mir-138-P2  Sha-Mir-138-P2  Spt-Mir-138-P2  Sto-Mir-138-P2  Tgu-Mir-138-P2  Tni-Mir-138-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)
11: 2044406-2044473 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCGCAGGAUGGCCGGGUAUUGUUGCUGCAGCUGGUGUUGUGAAUCAGGCCGACGGCAAGCGCUUCCUACUAUCCGGCUAUUUCACUACACCAGGGUUGCAUCAUACCACUCCCUUCGCUCGCCUCC
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Structure
        10           20        30        40        50        60    
CGCCGCAGGAUGGCCGG---|   U U   U  AG       U     UCA     ACGGCAAGCG 
                    GUAU G UGC GC  CUGGUGU GUGAA   GGCCG          C
                    CAUA C ACG UG  GACCACA CACUU   UCGGC          U
CCUCCGCUCGCUUCCCUCAC^   - U   U  G-       U     UA-     CUAUCAUCCU 
      120       110        100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-138-P2_5p

mirBase accessionMIMAT0001122
Sequence
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Proposed targets TargetScanVert: gga-miR-138-5p
miRDB: MIMAT0001122
Star sequence

Gga-Mir-138-P2_3p*

mirBase accessionMIMAT0031069
Sequence
47- GCUAUUUCACUACACCAGGGU -68
Get sequence
Proposed targets TargetScanVert: gga-miR-138-2-3p
miRDB: MIMAT0031069