MirGeneDB 2.1
MirGeneDB ID

Gga-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-138-1
Paralogues Gga-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Ete-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 2: 40676611-40676671 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACGCAGGGCCCUGCCGGGUGCCGUGCAGCAGCUGGUGUUGUGAAUCAGGCCGUCACCAGUCGGAGAACGGCUACUUCACAACACCAGGGUGGCACUGCACCACACUUCGACGCCAGCCAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
GACGCAGGGCCCUGCCG--|    C    A  AG             UCA     UCACCAG 
                   GGUGC GUGC GC  CUGGUGUUGUGAA   GGCCG       \
                   CCACG CACG UG  GACCACAACACUU   UCGGC       U
GACCGACCGCAGCUUCACA^    U    G  G-             CA-     AAGAGGC 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-138-P1_5p
mirBase accessionMIMAT0001122
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
Proposed targets TargetScanVert: gga-miR-138-5p
miRDB: MIMAT0001122
Star sequence

Gga-Mir-138-P1_3p*
mirBase accessionMIMAT0026505
Sequence 
40- GCUACUUCACAACACCAGGGU -61
Get sequence
Proposed targets TargetScanVert: gga-miR-138-1-3p
miRDB: MIMAT0026505